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Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9741253/ https://www.ncbi.nlm.nih.gov/pubmed/36499319 http://dx.doi.org/10.3390/ijms232314991 |
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author | Hu, Fang Zhang, Yunxiang Guo, Jinping |
author_facet | Hu, Fang Zhang, Yunxiang Guo, Jinping |
author_sort | Hu, Fang |
collection | PubMed |
description | The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According to sequence alignment and phylogenetic analyses, one hundred and forty-five AP2/ERF genes were detected from the yellow horn genome. They were divided into four relatively conserved subfamilies, including 21 AP2 genes, 119 ERBP genes, 4 RAV genes, and 1 Soloist gene. Gene analysis of XsAP2/ERF TFs showed 87 XsAP2/ERF TFs lacked introns. There were 75 pairs of collinearity relationships between X. sorbifolium and Arabidopsis, indicating a close similarity. In addition, the expression patterns of XsAP2/ERF TFs under cold treatments confirmed that the XsAP2/ERF TFs play essential roles in abiotic stress response. The expression of eight XsAP2/ERF transcription factors was verified in different tissues and under various stress treatments using RT-qPCR. This study establishes a starting point for further research to explore the potential mechanisms of identifying candidate AP2/ERF TFs that could respond to the abiotic stress of yellow horn. |
format | Online Article Text |
id | pubmed-9741253 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97412532022-12-11 Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn Hu, Fang Zhang, Yunxiang Guo, Jinping Int J Mol Sci Article The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According to sequence alignment and phylogenetic analyses, one hundred and forty-five AP2/ERF genes were detected from the yellow horn genome. They were divided into four relatively conserved subfamilies, including 21 AP2 genes, 119 ERBP genes, 4 RAV genes, and 1 Soloist gene. Gene analysis of XsAP2/ERF TFs showed 87 XsAP2/ERF TFs lacked introns. There were 75 pairs of collinearity relationships between X. sorbifolium and Arabidopsis, indicating a close similarity. In addition, the expression patterns of XsAP2/ERF TFs under cold treatments confirmed that the XsAP2/ERF TFs play essential roles in abiotic stress response. The expression of eight XsAP2/ERF transcription factors was verified in different tissues and under various stress treatments using RT-qPCR. This study establishes a starting point for further research to explore the potential mechanisms of identifying candidate AP2/ERF TFs that could respond to the abiotic stress of yellow horn. MDPI 2022-11-30 /pmc/articles/PMC9741253/ /pubmed/36499319 http://dx.doi.org/10.3390/ijms232314991 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hu, Fang Zhang, Yunxiang Guo, Jinping Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn |
title | Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn |
title_full | Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn |
title_fullStr | Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn |
title_full_unstemmed | Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn |
title_short | Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn |
title_sort | identification and characterization of ap2/erf transcription factors in yellow horn |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9741253/ https://www.ncbi.nlm.nih.gov/pubmed/36499319 http://dx.doi.org/10.3390/ijms232314991 |
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