Cargando…

Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn

The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According...

Descripción completa

Detalles Bibliográficos
Autores principales: Hu, Fang, Zhang, Yunxiang, Guo, Jinping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9741253/
https://www.ncbi.nlm.nih.gov/pubmed/36499319
http://dx.doi.org/10.3390/ijms232314991
_version_ 1784848272869818368
author Hu, Fang
Zhang, Yunxiang
Guo, Jinping
author_facet Hu, Fang
Zhang, Yunxiang
Guo, Jinping
author_sort Hu, Fang
collection PubMed
description The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According to sequence alignment and phylogenetic analyses, one hundred and forty-five AP2/ERF genes were detected from the yellow horn genome. They were divided into four relatively conserved subfamilies, including 21 AP2 genes, 119 ERBP genes, 4 RAV genes, and 1 Soloist gene. Gene analysis of XsAP2/ERF TFs showed 87 XsAP2/ERF TFs lacked introns. There were 75 pairs of collinearity relationships between X. sorbifolium and Arabidopsis, indicating a close similarity. In addition, the expression patterns of XsAP2/ERF TFs under cold treatments confirmed that the XsAP2/ERF TFs play essential roles in abiotic stress response. The expression of eight XsAP2/ERF transcription factors was verified in different tissues and under various stress treatments using RT-qPCR. This study establishes a starting point for further research to explore the potential mechanisms of identifying candidate AP2/ERF TFs that could respond to the abiotic stress of yellow horn.
format Online
Article
Text
id pubmed-9741253
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-97412532022-12-11 Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn Hu, Fang Zhang, Yunxiang Guo, Jinping Int J Mol Sci Article The AP2/ERF gene family involves numerous plant processes, including growth, development, metabolism, and various plant stress responses. However, several studies have been conducted on the AP2/ERF gene family in yellow horn, a new type of oil woody crop and an essential oil crop in China. According to sequence alignment and phylogenetic analyses, one hundred and forty-five AP2/ERF genes were detected from the yellow horn genome. They were divided into four relatively conserved subfamilies, including 21 AP2 genes, 119 ERBP genes, 4 RAV genes, and 1 Soloist gene. Gene analysis of XsAP2/ERF TFs showed 87 XsAP2/ERF TFs lacked introns. There were 75 pairs of collinearity relationships between X. sorbifolium and Arabidopsis, indicating a close similarity. In addition, the expression patterns of XsAP2/ERF TFs under cold treatments confirmed that the XsAP2/ERF TFs play essential roles in abiotic stress response. The expression of eight XsAP2/ERF transcription factors was verified in different tissues and under various stress treatments using RT-qPCR. This study establishes a starting point for further research to explore the potential mechanisms of identifying candidate AP2/ERF TFs that could respond to the abiotic stress of yellow horn. MDPI 2022-11-30 /pmc/articles/PMC9741253/ /pubmed/36499319 http://dx.doi.org/10.3390/ijms232314991 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hu, Fang
Zhang, Yunxiang
Guo, Jinping
Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
title Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
title_full Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
title_fullStr Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
title_full_unstemmed Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
title_short Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn
title_sort identification and characterization of ap2/erf transcription factors in yellow horn
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9741253/
https://www.ncbi.nlm.nih.gov/pubmed/36499319
http://dx.doi.org/10.3390/ijms232314991
work_keys_str_mv AT hufang identificationandcharacterizationofap2erftranscriptionfactorsinyellowhorn
AT zhangyunxiang identificationandcharacterizationofap2erftranscriptionfactorsinyellowhorn
AT guojinping identificationandcharacterizationofap2erftranscriptionfactorsinyellowhorn