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Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora

This work aimed to use the Bayesian approach to discriminate 43 genotypes of Coffea canephora cv. Conilon, which were cultivated in two producing regions to identify the most stable and productive genotypes. The experiment was a randomized block design with three replications and seven plants per pl...

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Autores principales: Covre, André Monzoli, da Silva, Flavia Alves, Oliosi, Gleison, Correa, Caio Cezar Guedes, Viana, Alexandre Pio, Partelli, Fabio Luiz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9741437/
https://www.ncbi.nlm.nih.gov/pubmed/36501314
http://dx.doi.org/10.3390/plants11233274
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author Covre, André Monzoli
da Silva, Flavia Alves
Oliosi, Gleison
Correa, Caio Cezar Guedes
Viana, Alexandre Pio
Partelli, Fabio Luiz
author_facet Covre, André Monzoli
da Silva, Flavia Alves
Oliosi, Gleison
Correa, Caio Cezar Guedes
Viana, Alexandre Pio
Partelli, Fabio Luiz
author_sort Covre, André Monzoli
collection PubMed
description This work aimed to use the Bayesian approach to discriminate 43 genotypes of Coffea canephora cv. Conilon, which were cultivated in two producing regions to identify the most stable and productive genotypes. The experiment was a randomized block design with three replications and seven plants per plot, carried out in the south of Bahia and the north of Espírito Santo, environments with different climatic conditions, and evaluated during four harvests. The proposed Bayesian methodology was implemented in R language, using the MCMCglmm package. This approach made it possible to find great genetic divergence between the materials, and detect significant effects for both genotype, environment, and year, but the hyper-parametrized models (block effect) presented problems of singularity and convergence. It was also possible to detect a few differences between crops within the same environment. With a model with lower residual, it was possible to recommend the most productive genotypes for both environments: LB1, AD1, Peneirão, Z21, and P2.
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spelling pubmed-97414372022-12-11 Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora Covre, André Monzoli da Silva, Flavia Alves Oliosi, Gleison Correa, Caio Cezar Guedes Viana, Alexandre Pio Partelli, Fabio Luiz Plants (Basel) Article This work aimed to use the Bayesian approach to discriminate 43 genotypes of Coffea canephora cv. Conilon, which were cultivated in two producing regions to identify the most stable and productive genotypes. The experiment was a randomized block design with three replications and seven plants per plot, carried out in the south of Bahia and the north of Espírito Santo, environments with different climatic conditions, and evaluated during four harvests. The proposed Bayesian methodology was implemented in R language, using the MCMCglmm package. This approach made it possible to find great genetic divergence between the materials, and detect significant effects for both genotype, environment, and year, but the hyper-parametrized models (block effect) presented problems of singularity and convergence. It was also possible to detect a few differences between crops within the same environment. With a model with lower residual, it was possible to recommend the most productive genotypes for both environments: LB1, AD1, Peneirão, Z21, and P2. MDPI 2022-11-28 /pmc/articles/PMC9741437/ /pubmed/36501314 http://dx.doi.org/10.3390/plants11233274 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Covre, André Monzoli
da Silva, Flavia Alves
Oliosi, Gleison
Correa, Caio Cezar Guedes
Viana, Alexandre Pio
Partelli, Fabio Luiz
Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora
title Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora
title_full Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora
title_fullStr Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora
title_full_unstemmed Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora
title_short Multi-Environment and Multi-Year Bayesian Analysis Approach in Coffee canephora
title_sort multi-environment and multi-year bayesian analysis approach in coffee canephora
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9741437/
https://www.ncbi.nlm.nih.gov/pubmed/36501314
http://dx.doi.org/10.3390/plants11233274
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