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Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis
Coronary heart disease (CHD) is tightly associated with gut microbiota, but microbiota heterogeneity limits the application of microbial biomarkers and personalized interventions demand regional-specific features. The purpose of this study was to comprehensively characterize the regional pattern of...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9742380/ https://www.ncbi.nlm.nih.gov/pubmed/36519129 http://dx.doi.org/10.3389/fcimb.2022.1007161 |
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author | Li, Wenlong Li, Huijun Wang, Shaolan Han, Keyang Liu, Yuan An, Zhen Wu, Hui Li, Juan Song, Jie Wu, Weidong |
author_facet | Li, Wenlong Li, Huijun Wang, Shaolan Han, Keyang Liu, Yuan An, Zhen Wu, Hui Li, Juan Song, Jie Wu, Weidong |
author_sort | Li, Wenlong |
collection | PubMed |
description | Coronary heart disease (CHD) is tightly associated with gut microbiota, but microbiota heterogeneity limits the application of microbial biomarkers and personalized interventions demand regional-specific features. The purpose of this study was to comprehensively characterize the regional pattern of gut microbiota in rural residents with CHD and assess the predictive value and clinical correlations of local microbial signatures. We profiled the gut microbiota by shotgun metagenomic sequencing from 19 CHD and 19 healthy residents in rural Xinxiang, China, and tested the physiological parameters. The results indicated that microbial diversity, as well as KEGG orthology (KO) and carbohydrate-active enzymes (CAZymes) functions, deserved no significant disparities between CHD and healthy residents. The relative abundance of Bacteroidetes phylum was significantly lower and unclassified Lachnospiraceae genus, and Eubacterium rectale species were markedly higher in CHD residents compared with the healthy control. Co-occurrence network revealed a more diverse and scattered ecology in CHD residents. LEfSe identified 39 potential biomarkers and butanoate metabolism and glycosyltransferases families were the enhanced KO and CAZymes in CHD residents, respectively. Twenty key signatures were determined by the random forest algorithm and most of them belonged to the Clostridium cluster. These key signatures harbored a superior accuracy of 83.9% to distinguish CHD and healthy residents and, fasting serum insulin, diastolic blood pressure, and body mass index were the top three clinical parameters influencing the gut bacterial community. Furthermore, we also found that low-density lipoprotein and waist circumference had significantly positive correlations with the members of the Clostridium cluster. These findings expand our knowledge in the regional-specific pattern of gut microbiota for rural CHD residents and highlight the non-invasive diagnostic value and clinical correlations of microbial signatures. |
format | Online Article Text |
id | pubmed-9742380 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97423802022-12-13 Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis Li, Wenlong Li, Huijun Wang, Shaolan Han, Keyang Liu, Yuan An, Zhen Wu, Hui Li, Juan Song, Jie Wu, Weidong Front Cell Infect Microbiol Cellular and Infection Microbiology Coronary heart disease (CHD) is tightly associated with gut microbiota, but microbiota heterogeneity limits the application of microbial biomarkers and personalized interventions demand regional-specific features. The purpose of this study was to comprehensively characterize the regional pattern of gut microbiota in rural residents with CHD and assess the predictive value and clinical correlations of local microbial signatures. We profiled the gut microbiota by shotgun metagenomic sequencing from 19 CHD and 19 healthy residents in rural Xinxiang, China, and tested the physiological parameters. The results indicated that microbial diversity, as well as KEGG orthology (KO) and carbohydrate-active enzymes (CAZymes) functions, deserved no significant disparities between CHD and healthy residents. The relative abundance of Bacteroidetes phylum was significantly lower and unclassified Lachnospiraceae genus, and Eubacterium rectale species were markedly higher in CHD residents compared with the healthy control. Co-occurrence network revealed a more diverse and scattered ecology in CHD residents. LEfSe identified 39 potential biomarkers and butanoate metabolism and glycosyltransferases families were the enhanced KO and CAZymes in CHD residents, respectively. Twenty key signatures were determined by the random forest algorithm and most of them belonged to the Clostridium cluster. These key signatures harbored a superior accuracy of 83.9% to distinguish CHD and healthy residents and, fasting serum insulin, diastolic blood pressure, and body mass index were the top three clinical parameters influencing the gut bacterial community. Furthermore, we also found that low-density lipoprotein and waist circumference had significantly positive correlations with the members of the Clostridium cluster. These findings expand our knowledge in the regional-specific pattern of gut microbiota for rural CHD residents and highlight the non-invasive diagnostic value and clinical correlations of microbial signatures. Frontiers Media S.A. 2022-11-28 /pmc/articles/PMC9742380/ /pubmed/36519129 http://dx.doi.org/10.3389/fcimb.2022.1007161 Text en Copyright © 2022 Li, Li, Wang, Han, Liu, An, Wu, Li, Song and Wu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cellular and Infection Microbiology Li, Wenlong Li, Huijun Wang, Shaolan Han, Keyang Liu, Yuan An, Zhen Wu, Hui Li, Juan Song, Jie Wu, Weidong Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis |
title | Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis |
title_full | Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis |
title_fullStr | Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis |
title_full_unstemmed | Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis |
title_short | Regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: A metagenomic analysis |
title_sort | regional pattern and signatures of gut microbiota in rural residents with coronary heart disease: a metagenomic analysis |
topic | Cellular and Infection Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9742380/ https://www.ncbi.nlm.nih.gov/pubmed/36519129 http://dx.doi.org/10.3389/fcimb.2022.1007161 |
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