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Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer

Integrin subunit alpha 3 (ITGA3) expression correlates with the development and prognosis of human cancers. This study aimed to investigate the association of ITGA3 expression with pancreatic cancer (PCa) prognosis. The ITGA3 gene expression data were extracted from The Cancer Genome Atlas (TCGA) pa...

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Autores principales: Hu, Fangfang, Zhao, Liangtao, Wang, Yang, Ye, Hao, Tang, Haodong, Zhou, Jiahua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9743194/
https://www.ncbi.nlm.nih.gov/pubmed/36561844
http://dx.doi.org/10.1515/med-2022-0606
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author Hu, Fangfang
Zhao, Liangtao
Wang, Yang
Ye, Hao
Tang, Haodong
Zhou, Jiahua
author_facet Hu, Fangfang
Zhao, Liangtao
Wang, Yang
Ye, Hao
Tang, Haodong
Zhou, Jiahua
author_sort Hu, Fangfang
collection PubMed
description Integrin subunit alpha 3 (ITGA3) expression correlates with the development and prognosis of human cancers. This study aimed to investigate the association of ITGA3 expression with pancreatic cancer (PCa) prognosis. The ITGA3 gene expression data were extracted from The Cancer Genome Atlas (TCGA) pancreatic adenocarcinoma (PAAD) cohort and 14 Gene Expression Omnibus microarray datasets. The differences in ITGA3 expression levels between tumor and non-tumor tissues were compared using the Mann–Whitney U test. Cox regression analysis and meta-analysis were performed to detect the association of ITGA3 expression with PCa prognosis. ITGA3 expression was higher in tumors than in controls. Tumors with advanced grades (3/4) had higher ITGA3 levels compared with early-grade tumors (1/2). The meta-analysis of the TCGA PAAD cohort and seven microarray datasets (GSE28735, GSE62452, GSE79668, GSE71729, GSE57495, GSE78229, and GSE21501) showed that ITGA3 was a prognostic biomarker in PCa (hazard ratio (HR) = 1.38, 95% confidence interval (CI) 1.26–1.51, p < 0.00001). Five ITGA3-related genes, including ITGB1 (HR = 1.6), ITGB5 (HR = 1.6), ITGB6 (HR = 1.6), LAMA3 (HR = 2.1), and CD9 (HR = 2.3), correlated with PCa prognosis significantly (p < 0.05). Functional enrichment analysis showed that ITGA3 was related to “hsa04151: PI3K-Akt signaling pathway” and “hsa04510: Focal adhesion.” We concluded that high ITGA3 expression was a potential prognostic biomarker in PCa.
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spelling pubmed-97431942022-12-21 Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer Hu, Fangfang Zhao, Liangtao Wang, Yang Ye, Hao Tang, Haodong Zhou, Jiahua Open Med (Wars) Research Article Integrin subunit alpha 3 (ITGA3) expression correlates with the development and prognosis of human cancers. This study aimed to investigate the association of ITGA3 expression with pancreatic cancer (PCa) prognosis. The ITGA3 gene expression data were extracted from The Cancer Genome Atlas (TCGA) pancreatic adenocarcinoma (PAAD) cohort and 14 Gene Expression Omnibus microarray datasets. The differences in ITGA3 expression levels between tumor and non-tumor tissues were compared using the Mann–Whitney U test. Cox regression analysis and meta-analysis were performed to detect the association of ITGA3 expression with PCa prognosis. ITGA3 expression was higher in tumors than in controls. Tumors with advanced grades (3/4) had higher ITGA3 levels compared with early-grade tumors (1/2). The meta-analysis of the TCGA PAAD cohort and seven microarray datasets (GSE28735, GSE62452, GSE79668, GSE71729, GSE57495, GSE78229, and GSE21501) showed that ITGA3 was a prognostic biomarker in PCa (hazard ratio (HR) = 1.38, 95% confidence interval (CI) 1.26–1.51, p < 0.00001). Five ITGA3-related genes, including ITGB1 (HR = 1.6), ITGB5 (HR = 1.6), ITGB6 (HR = 1.6), LAMA3 (HR = 2.1), and CD9 (HR = 2.3), correlated with PCa prognosis significantly (p < 0.05). Functional enrichment analysis showed that ITGA3 was related to “hsa04151: PI3K-Akt signaling pathway” and “hsa04510: Focal adhesion.” We concluded that high ITGA3 expression was a potential prognostic biomarker in PCa. De Gruyter 2022-12-09 /pmc/articles/PMC9743194/ /pubmed/36561844 http://dx.doi.org/10.1515/med-2022-0606 Text en © 2022 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Research Article
Hu, Fangfang
Zhao, Liangtao
Wang, Yang
Ye, Hao
Tang, Haodong
Zhou, Jiahua
Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
title Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
title_full Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
title_fullStr Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
title_full_unstemmed Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
title_short Integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
title_sort integrated bioinformatics analysis shows integrin alpha 3 is a prognostic biomarker for pancreatic cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9743194/
https://www.ncbi.nlm.nih.gov/pubmed/36561844
http://dx.doi.org/10.1515/med-2022-0606
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