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A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors

BACKGROUND: Recent studies have identified ribonucleotide reductase subunit M2 (RRM2) as a putative promoter of tumors. However, no systematic analysis of its carcinogenicity has been conducted. METHODS: The potential functions of RRM2 in various tumor types were investigated using data from the Gen...

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Autores principales: Li, Yaqun, Fu, Wenhuan, Geng, Zikai, Song, Yun, Yang, Xionggang, He, Tianye, Wu, Jian, Wang, Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9744174/
https://www.ncbi.nlm.nih.gov/pubmed/36518297
http://dx.doi.org/10.7717/peerj.14432
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author Li, Yaqun
Fu, Wenhuan
Geng, Zikai
Song, Yun
Yang, Xionggang
He, Tianye
Wu, Jian
Wang, Bin
author_facet Li, Yaqun
Fu, Wenhuan
Geng, Zikai
Song, Yun
Yang, Xionggang
He, Tianye
Wu, Jian
Wang, Bin
author_sort Li, Yaqun
collection PubMed
description BACKGROUND: Recent studies have identified ribonucleotide reductase subunit M2 (RRM2) as a putative promoter of tumors. However, no systematic analysis of its carcinogenicity has been conducted. METHODS: The potential functions of RRM2 in various tumor types were investigated using data from the Genotype-Tissue Expression (GTEx), the Clinical Proteomic Tumor Analysis Consortium (CPTAC), the Cancer Genome Atlas (TCGA), the Human Protein Atlas (HPA), cBioPortal, GEPIA, String, and Gene Set Enrichment Analysis (GSEA). We analyzed the difference in mRNA and protein expression, pathological stage, survival, mutation, tumor microenvironment (TME), and immune cell infiltration in relation to RRM2. Meanwhile, using TCGA and the Tumor Immune Estimation Resource 2 (TIMER 2), the associations between RRM2 expression, immune infiltration, and immune-related genes were assessed. Additionally, CCK-8, Edu and RT-PCR assays were used to validate that RRM2 acts as an oncogene in liver cancer cells and its association with HBx. A cohort of liver hepatocellular carcinoma (LIHC) patients (n=154) from Huashan Hospital was analyzed for the expression of RRM2 and the association between RRM2 and immune infiltration. RESULTS: Using the GTEx and TCGA databases, we discovered that 28 tumors expressed RRM2 at significantly higher levels than the corresponding normal tissues. Increased RRM2 expression may be predictive of a poor overall survival (OS) in patients with seven different cancers. GO, KEGG, and GSEA analyses revealed that the biological process of RRM2 was associated with the regulation of carcinogenic processes and immune pathways in a variety of tumor types. The expression of RRM2 was highly correlated with maker genes involved in immune activation and immunosuppression, immune checkpoints, DNA mismatch repair system (MMR), and the infiltration levels of Tregs and macrophages (TAMs), suggesting that the carcinogenic effect of RRM2 may be achieved by regulating immune related genes. Moreover, as demonstrated by CCK-8 and Edu assays, RRM2 was an oncogene in liver cancer cells. We confirmed for the first time that RRM2 was significantly upregulated by HBx, suggesting that RRM2 may be a key regulator of LIHC induced by HBV. IHC analysis validated the upregulated expression of RRM2 protein and its correlation with immune infiltration makers in a LIHC patient cohort. CONCLUSION: RRM2 may be a valuable molecular biomarker for predicting prognosis and immunotherapeutic efficacy in pan-cancer, particularly in LIHC.
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spelling pubmed-97441742022-12-13 A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors Li, Yaqun Fu, Wenhuan Geng, Zikai Song, Yun Yang, Xionggang He, Tianye Wu, Jian Wang, Bin PeerJ Bioinformatics BACKGROUND: Recent studies have identified ribonucleotide reductase subunit M2 (RRM2) as a putative promoter of tumors. However, no systematic analysis of its carcinogenicity has been conducted. METHODS: The potential functions of RRM2 in various tumor types were investigated using data from the Genotype-Tissue Expression (GTEx), the Clinical Proteomic Tumor Analysis Consortium (CPTAC), the Cancer Genome Atlas (TCGA), the Human Protein Atlas (HPA), cBioPortal, GEPIA, String, and Gene Set Enrichment Analysis (GSEA). We analyzed the difference in mRNA and protein expression, pathological stage, survival, mutation, tumor microenvironment (TME), and immune cell infiltration in relation to RRM2. Meanwhile, using TCGA and the Tumor Immune Estimation Resource 2 (TIMER 2), the associations between RRM2 expression, immune infiltration, and immune-related genes were assessed. Additionally, CCK-8, Edu and RT-PCR assays were used to validate that RRM2 acts as an oncogene in liver cancer cells and its association with HBx. A cohort of liver hepatocellular carcinoma (LIHC) patients (n=154) from Huashan Hospital was analyzed for the expression of RRM2 and the association between RRM2 and immune infiltration. RESULTS: Using the GTEx and TCGA databases, we discovered that 28 tumors expressed RRM2 at significantly higher levels than the corresponding normal tissues. Increased RRM2 expression may be predictive of a poor overall survival (OS) in patients with seven different cancers. GO, KEGG, and GSEA analyses revealed that the biological process of RRM2 was associated with the regulation of carcinogenic processes and immune pathways in a variety of tumor types. The expression of RRM2 was highly correlated with maker genes involved in immune activation and immunosuppression, immune checkpoints, DNA mismatch repair system (MMR), and the infiltration levels of Tregs and macrophages (TAMs), suggesting that the carcinogenic effect of RRM2 may be achieved by regulating immune related genes. Moreover, as demonstrated by CCK-8 and Edu assays, RRM2 was an oncogene in liver cancer cells. We confirmed for the first time that RRM2 was significantly upregulated by HBx, suggesting that RRM2 may be a key regulator of LIHC induced by HBV. IHC analysis validated the upregulated expression of RRM2 protein and its correlation with immune infiltration makers in a LIHC patient cohort. CONCLUSION: RRM2 may be a valuable molecular biomarker for predicting prognosis and immunotherapeutic efficacy in pan-cancer, particularly in LIHC. PeerJ Inc. 2022-11-28 /pmc/articles/PMC9744174/ /pubmed/36518297 http://dx.doi.org/10.7717/peerj.14432 Text en ©2022 Li et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Li, Yaqun
Fu, Wenhuan
Geng, Zikai
Song, Yun
Yang, Xionggang
He, Tianye
Wu, Jian
Wang, Bin
A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors
title A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors
title_full A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors
title_fullStr A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors
title_full_unstemmed A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors
title_short A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors
title_sort pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit m2 in human tumors
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9744174/
https://www.ncbi.nlm.nih.gov/pubmed/36518297
http://dx.doi.org/10.7717/peerj.14432
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