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A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
Reliable and effective diagnostic systems are of vital importance for COVID-19, specifically for triage and screening procedures. In this work, a fully automatic diagnostic system based on chest X-ray images (CXR) has been proposed. It relies on the few-shot paradigm, which allows to work with small...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745688/ https://www.ncbi.nlm.nih.gov/pubmed/36513713 http://dx.doi.org/10.1038/s41598-022-25754-6 |
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author | Cores, Daniel Vila-Blanco, Nicolás Pérez-Alarcón, María Martínez-de-Alegría, Anxo Mucientes, Manuel Carreira, María J. |
author_facet | Cores, Daniel Vila-Blanco, Nicolás Pérez-Alarcón, María Martínez-de-Alegría, Anxo Mucientes, Manuel Carreira, María J. |
author_sort | Cores, Daniel |
collection | PubMed |
description | Reliable and effective diagnostic systems are of vital importance for COVID-19, specifically for triage and screening procedures. In this work, a fully automatic diagnostic system based on chest X-ray images (CXR) has been proposed. It relies on the few-shot paradigm, which allows to work with small databases. Furthermore, three components have been added to improve the diagnosis performance: (1) a region proposal network which makes the system focus on the lungs; (2) a novel cost function which adds expert knowledge by giving specific penalties to each misdiagnosis; and (3) an ensembling procedure integrating multiple image comparisons to produce more reliable diagnoses. Moreover, the COVID-SC dataset has been introduced, comprising almost 1100 AnteroPosterior CXR images, namely 439 negative and 653 positive according to the RT-PCR test. Expert radiologists divided the negative images into three categories (normal lungs, COVID-related diseases, and other diseases) and the positive images into four severity levels. This entails the most complete COVID-19 dataset in terms of patient diversity. The proposed system has been compared with state-of-the-art methods in the COVIDGR-1.0 public database, achieving the highest accuracy (81.13% ± 2.76%) and the most robust results. An ablation study proved that each system component contributes to improve the overall performance. The procedure has also been validated on the COVID-SC dataset under different scenarios, with accuracies ranging from 70.81 to 87.40%. In conclusion, our proposal provides a good accuracy appropriate for the early detection of COVID-19. |
format | Online Article Text |
id | pubmed-9745688 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97456882022-12-13 A few-shot approach for COVID-19 screening in standard and portable chest X-ray images Cores, Daniel Vila-Blanco, Nicolás Pérez-Alarcón, María Martínez-de-Alegría, Anxo Mucientes, Manuel Carreira, María J. Sci Rep Article Reliable and effective diagnostic systems are of vital importance for COVID-19, specifically for triage and screening procedures. In this work, a fully automatic diagnostic system based on chest X-ray images (CXR) has been proposed. It relies on the few-shot paradigm, which allows to work with small databases. Furthermore, three components have been added to improve the diagnosis performance: (1) a region proposal network which makes the system focus on the lungs; (2) a novel cost function which adds expert knowledge by giving specific penalties to each misdiagnosis; and (3) an ensembling procedure integrating multiple image comparisons to produce more reliable diagnoses. Moreover, the COVID-SC dataset has been introduced, comprising almost 1100 AnteroPosterior CXR images, namely 439 negative and 653 positive according to the RT-PCR test. Expert radiologists divided the negative images into three categories (normal lungs, COVID-related diseases, and other diseases) and the positive images into four severity levels. This entails the most complete COVID-19 dataset in terms of patient diversity. The proposed system has been compared with state-of-the-art methods in the COVIDGR-1.0 public database, achieving the highest accuracy (81.13% ± 2.76%) and the most robust results. An ablation study proved that each system component contributes to improve the overall performance. The procedure has also been validated on the COVID-SC dataset under different scenarios, with accuracies ranging from 70.81 to 87.40%. In conclusion, our proposal provides a good accuracy appropriate for the early detection of COVID-19. Nature Publishing Group UK 2022-12-13 /pmc/articles/PMC9745688/ /pubmed/36513713 http://dx.doi.org/10.1038/s41598-022-25754-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Cores, Daniel Vila-Blanco, Nicolás Pérez-Alarcón, María Martínez-de-Alegría, Anxo Mucientes, Manuel Carreira, María J. A few-shot approach for COVID-19 screening in standard and portable chest X-ray images |
title | A few-shot approach for COVID-19 screening in standard and portable chest X-ray images |
title_full | A few-shot approach for COVID-19 screening in standard and portable chest X-ray images |
title_fullStr | A few-shot approach for COVID-19 screening in standard and portable chest X-ray images |
title_full_unstemmed | A few-shot approach for COVID-19 screening in standard and portable chest X-ray images |
title_short | A few-shot approach for COVID-19 screening in standard and portable chest X-ray images |
title_sort | few-shot approach for covid-19 screening in standard and portable chest x-ray images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745688/ https://www.ncbi.nlm.nih.gov/pubmed/36513713 http://dx.doi.org/10.1038/s41598-022-25754-6 |
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