Cargando…

A few-shot approach for COVID-19 screening in standard and portable chest X-ray images

Reliable and effective diagnostic systems are of vital importance for COVID-19, specifically for triage and screening procedures. In this work, a fully automatic diagnostic system based on chest X-ray images (CXR) has been proposed. It relies on the few-shot paradigm, which allows to work with small...

Descripción completa

Detalles Bibliográficos
Autores principales: Cores, Daniel, Vila-Blanco, Nicolás, Pérez-Alarcón, María, Martínez-de-Alegría, Anxo, Mucientes, Manuel, Carreira, María J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745688/
https://www.ncbi.nlm.nih.gov/pubmed/36513713
http://dx.doi.org/10.1038/s41598-022-25754-6
_version_ 1784849202173444096
author Cores, Daniel
Vila-Blanco, Nicolás
Pérez-Alarcón, María
Martínez-de-Alegría, Anxo
Mucientes, Manuel
Carreira, María J.
author_facet Cores, Daniel
Vila-Blanco, Nicolás
Pérez-Alarcón, María
Martínez-de-Alegría, Anxo
Mucientes, Manuel
Carreira, María J.
author_sort Cores, Daniel
collection PubMed
description Reliable and effective diagnostic systems are of vital importance for COVID-19, specifically for triage and screening procedures. In this work, a fully automatic diagnostic system based on chest X-ray images (CXR) has been proposed. It relies on the few-shot paradigm, which allows to work with small databases. Furthermore, three components have been added to improve the diagnosis performance: (1) a region proposal network which makes the system focus on the lungs; (2) a novel cost function which adds expert knowledge by giving specific penalties to each misdiagnosis; and (3) an ensembling procedure integrating multiple image comparisons to produce more reliable diagnoses. Moreover, the COVID-SC dataset has been introduced, comprising almost 1100 AnteroPosterior CXR images, namely 439 negative and 653 positive according to the RT-PCR test. Expert radiologists divided the negative images into three categories (normal lungs, COVID-related diseases, and other diseases) and the positive images into four severity levels. This entails the most complete COVID-19 dataset in terms of patient diversity. The proposed system has been compared with state-of-the-art methods in the COVIDGR-1.0 public database, achieving the highest accuracy (81.13% ± 2.76%) and the most robust results. An ablation study proved that each system component contributes to improve the overall performance. The procedure has also been validated on the COVID-SC dataset under different scenarios, with accuracies ranging from 70.81 to 87.40%. In conclusion, our proposal provides a good accuracy appropriate for the early detection of COVID-19.
format Online
Article
Text
id pubmed-9745688
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-97456882022-12-13 A few-shot approach for COVID-19 screening in standard and portable chest X-ray images Cores, Daniel Vila-Blanco, Nicolás Pérez-Alarcón, María Martínez-de-Alegría, Anxo Mucientes, Manuel Carreira, María J. Sci Rep Article Reliable and effective diagnostic systems are of vital importance for COVID-19, specifically for triage and screening procedures. In this work, a fully automatic diagnostic system based on chest X-ray images (CXR) has been proposed. It relies on the few-shot paradigm, which allows to work with small databases. Furthermore, three components have been added to improve the diagnosis performance: (1) a region proposal network which makes the system focus on the lungs; (2) a novel cost function which adds expert knowledge by giving specific penalties to each misdiagnosis; and (3) an ensembling procedure integrating multiple image comparisons to produce more reliable diagnoses. Moreover, the COVID-SC dataset has been introduced, comprising almost 1100 AnteroPosterior CXR images, namely 439 negative and 653 positive according to the RT-PCR test. Expert radiologists divided the negative images into three categories (normal lungs, COVID-related diseases, and other diseases) and the positive images into four severity levels. This entails the most complete COVID-19 dataset in terms of patient diversity. The proposed system has been compared with state-of-the-art methods in the COVIDGR-1.0 public database, achieving the highest accuracy (81.13% ± 2.76%) and the most robust results. An ablation study proved that each system component contributes to improve the overall performance. The procedure has also been validated on the COVID-SC dataset under different scenarios, with accuracies ranging from 70.81 to 87.40%. In conclusion, our proposal provides a good accuracy appropriate for the early detection of COVID-19. Nature Publishing Group UK 2022-12-13 /pmc/articles/PMC9745688/ /pubmed/36513713 http://dx.doi.org/10.1038/s41598-022-25754-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Cores, Daniel
Vila-Blanco, Nicolás
Pérez-Alarcón, María
Martínez-de-Alegría, Anxo
Mucientes, Manuel
Carreira, María J.
A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
title A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
title_full A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
title_fullStr A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
title_full_unstemmed A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
title_short A few-shot approach for COVID-19 screening in standard and portable chest X-ray images
title_sort few-shot approach for covid-19 screening in standard and portable chest x-ray images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745688/
https://www.ncbi.nlm.nih.gov/pubmed/36513713
http://dx.doi.org/10.1038/s41598-022-25754-6
work_keys_str_mv AT coresdaniel afewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT vilablanconicolas afewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT perezalarconmaria afewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT martinezdealegriaanxo afewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT mucientesmanuel afewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT carreiramariaj afewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT coresdaniel fewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT vilablanconicolas fewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT perezalarconmaria fewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT martinezdealegriaanxo fewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT mucientesmanuel fewshotapproachforcovid19screeninginstandardandportablechestxrayimages
AT carreiramariaj fewshotapproachforcovid19screeninginstandardandportablechestxrayimages