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Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza
In response to abiotic stresses, transcription factors are essential. Heat shock transcription factors (HSFs), which control gene expression, serve as essential regulators of plant growth, development, and stress response. As a model medicinal plant, Salvia miltiorrhiza is a crucial component in the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745953/ https://www.ncbi.nlm.nih.gov/pubmed/36523473 http://dx.doi.org/10.7717/peerj.14464 |
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author | Liu, Rui Zou, Peijin Yan, Zhu-Yun Chen, Xin |
author_facet | Liu, Rui Zou, Peijin Yan, Zhu-Yun Chen, Xin |
author_sort | Liu, Rui |
collection | PubMed |
description | In response to abiotic stresses, transcription factors are essential. Heat shock transcription factors (HSFs), which control gene expression, serve as essential regulators of plant growth, development, and stress response. As a model medicinal plant, Salvia miltiorrhiza is a crucial component in the treatment of cardiovascular illnesses. But throughout its growth cycle, S.miltiorrhiza is exposed to a series of abiotic challenges, including heat and drought. In this study, 35 HSF genes were identified based on genome sequencing of Salvia miltiorrhiza utilizing bioinformatics techniques. Additionally, 35 genes were classified into three groups by phylogeny and gene structural analysis, comprising 22 HSFA, 11 HSFB, and two HSFC. The distribution and sequence analysis of motif showed that SmHSFs were relatively conservative. In SmHSF genes, analysis of the promoter region revealed the presence of many cis-acting elements linked to stress, hormones, and growth and development, suggesting that these factors have regulatory roles. The majority of SmHSFs were expressed in response to heat and drought stress, according to combined transcriptome and real-time quantitative PCR (qRT-PCR) analyses. In conclusion, this study looked at the SmHSF gene family using genome-wide identification, evolutionary analysis, sequence characterization, and expression analysis. This research serves as a foundation for further investigations into the role of HSF genes and their molecular mechanisms in plant stress responses. |
format | Online Article Text |
id | pubmed-9745953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97459532022-12-14 Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza Liu, Rui Zou, Peijin Yan, Zhu-Yun Chen, Xin PeerJ Bioinformatics In response to abiotic stresses, transcription factors are essential. Heat shock transcription factors (HSFs), which control gene expression, serve as essential regulators of plant growth, development, and stress response. As a model medicinal plant, Salvia miltiorrhiza is a crucial component in the treatment of cardiovascular illnesses. But throughout its growth cycle, S.miltiorrhiza is exposed to a series of abiotic challenges, including heat and drought. In this study, 35 HSF genes were identified based on genome sequencing of Salvia miltiorrhiza utilizing bioinformatics techniques. Additionally, 35 genes were classified into three groups by phylogeny and gene structural analysis, comprising 22 HSFA, 11 HSFB, and two HSFC. The distribution and sequence analysis of motif showed that SmHSFs were relatively conservative. In SmHSF genes, analysis of the promoter region revealed the presence of many cis-acting elements linked to stress, hormones, and growth and development, suggesting that these factors have regulatory roles. The majority of SmHSFs were expressed in response to heat and drought stress, according to combined transcriptome and real-time quantitative PCR (qRT-PCR) analyses. In conclusion, this study looked at the SmHSF gene family using genome-wide identification, evolutionary analysis, sequence characterization, and expression analysis. This research serves as a foundation for further investigations into the role of HSF genes and their molecular mechanisms in plant stress responses. PeerJ Inc. 2022-12-05 /pmc/articles/PMC9745953/ /pubmed/36523473 http://dx.doi.org/10.7717/peerj.14464 Text en ©2022 Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Liu, Rui Zou, Peijin Yan, Zhu-Yun Chen, Xin Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza |
title | Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza |
title_full | Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza |
title_fullStr | Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza |
title_full_unstemmed | Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza |
title_short | Identification, classification, and expression profile analysis of heat shock transcription factor gene family in Salvia miltiorrhiza |
title_sort | identification, classification, and expression profile analysis of heat shock transcription factor gene family in salvia miltiorrhiza |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745953/ https://www.ncbi.nlm.nih.gov/pubmed/36523473 http://dx.doi.org/10.7717/peerj.14464 |
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