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MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT

The automatic segmentation of COVID-19 pneumonia from a computerized tomography (CT) scan has become a major interest for scholars in developing a powerful diagnostic framework in the Internet of Medical Things (IoMT). Federated deep learning (FDL) is considered a promising approach for efficient an...

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Autores principales: Ding, Weiping, Abdel-Basset, Mohamed, Hawash, Hossam, Pedrycz, Witold
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745980/
https://www.ncbi.nlm.nih.gov/pubmed/36532157
http://dx.doi.org/10.1016/j.ins.2022.12.017
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author Ding, Weiping
Abdel-Basset, Mohamed
Hawash, Hossam
Pedrycz, Witold
author_facet Ding, Weiping
Abdel-Basset, Mohamed
Hawash, Hossam
Pedrycz, Witold
author_sort Ding, Weiping
collection PubMed
description The automatic segmentation of COVID-19 pneumonia from a computerized tomography (CT) scan has become a major interest for scholars in developing a powerful diagnostic framework in the Internet of Medical Things (IoMT). Federated deep learning (FDL) is considered a promising approach for efficient and cooperative training from multi-institutional image data. However, the nonindependent and identically distributed (Non-IID) data from health care remain a remarkable challenge, limiting the applicability of FDL in the real world. The variability in features incurred by different scanning protocols, scanners, or acquisition parameters produces the learning drift phenomena during the training, which impairs both the training speed and segmentation performance of the model. This paper proposes a novel FDL approach for reliable and efficient multi-institutional COVID-19 segmentation, called MIC-Net. MIC-Net consists of three main building modules: the down-sampler, context enrichment (CE) module, and up-sampler. The down-sampler was designed to effectively learn both local and global representations from input CT scans by combining the advantages of lightweight convolutional and attention modules. The contextual enrichment (CE) module is introduced to enable the network to capture the contextual representation that can be later exploited to enrich the semantic knowledge of the up-sampler through skip connections. To further tackle the inter-site heterogeneity within the model, the approach uses an adaptive and switchable normalization (ASN) to adaptively choose the best normalization strategy according to the underlying data. A novel federated periodic selection protocol (FED-PCS) is proposed to fairly select the training participants according to their resource state, data quality, and loss of a local model. The results of an experimental evaluation of MIC-Net on three publicly available data sets show its robust performance, with an average dice score of 88.90% and an average surface dice of 87.53%.
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spelling pubmed-97459802022-12-13 MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT Ding, Weiping Abdel-Basset, Mohamed Hawash, Hossam Pedrycz, Witold Inf Sci (N Y) Article The automatic segmentation of COVID-19 pneumonia from a computerized tomography (CT) scan has become a major interest for scholars in developing a powerful diagnostic framework in the Internet of Medical Things (IoMT). Federated deep learning (FDL) is considered a promising approach for efficient and cooperative training from multi-institutional image data. However, the nonindependent and identically distributed (Non-IID) data from health care remain a remarkable challenge, limiting the applicability of FDL in the real world. The variability in features incurred by different scanning protocols, scanners, or acquisition parameters produces the learning drift phenomena during the training, which impairs both the training speed and segmentation performance of the model. This paper proposes a novel FDL approach for reliable and efficient multi-institutional COVID-19 segmentation, called MIC-Net. MIC-Net consists of three main building modules: the down-sampler, context enrichment (CE) module, and up-sampler. The down-sampler was designed to effectively learn both local and global representations from input CT scans by combining the advantages of lightweight convolutional and attention modules. The contextual enrichment (CE) module is introduced to enable the network to capture the contextual representation that can be later exploited to enrich the semantic knowledge of the up-sampler through skip connections. To further tackle the inter-site heterogeneity within the model, the approach uses an adaptive and switchable normalization (ASN) to adaptively choose the best normalization strategy according to the underlying data. A novel federated periodic selection protocol (FED-PCS) is proposed to fairly select the training participants according to their resource state, data quality, and loss of a local model. The results of an experimental evaluation of MIC-Net on three publicly available data sets show its robust performance, with an average dice score of 88.90% and an average surface dice of 87.53%. Elsevier Inc. 2023-04 2022-12-13 /pmc/articles/PMC9745980/ /pubmed/36532157 http://dx.doi.org/10.1016/j.ins.2022.12.017 Text en © 2022 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Ding, Weiping
Abdel-Basset, Mohamed
Hawash, Hossam
Pedrycz, Witold
MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT
title MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT
title_full MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT
title_fullStr MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT
title_full_unstemmed MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT
title_short MIC-Net: A deep network for cross-site segmentation of COVID-19 infection in the fog-assisted IoMT
title_sort mic-net: a deep network for cross-site segmentation of covid-19 infection in the fog-assisted iomt
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745980/
https://www.ncbi.nlm.nih.gov/pubmed/36532157
http://dx.doi.org/10.1016/j.ins.2022.12.017
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