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Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass

A number of crop wild relatives can tolerate extreme stress to a degree outside the range observed in their domesticated relatives. However, it is unclear whether or how the molecular mechanisms employed by these species can be translated to domesticated crops. Paspalum (Paspalum vaginatum) is a sel...

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Autores principales: Sun, Guangchao, Wase, Nishikant, Shu, Shengqiang, Jenkins, Jerry, Zhou, Bangjun, Torres-Rodríguez, J. Vladimir, Chen, Cindy, Sandor, Laura, Plott, Chris, Yoshinga, Yuko, Daum, Christopher, Qi, Peng, Barry, Kerrie, Lipzen, Anna, Berry, Luke, Pedersen, Connor, Gottilla, Thomas, Foltz, Ashley, Yu, Huihui, O’Malley, Ronan, Zhang, Chi, Devos, Katrien M., Sigmon, Brandi, Yu, Bin, Obata, Toshihiro, Schmutz, Jeremy, Schnable, James C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9747981/
https://www.ncbi.nlm.nih.gov/pubmed/36513676
http://dx.doi.org/10.1038/s41467-022-35507-8
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author Sun, Guangchao
Wase, Nishikant
Shu, Shengqiang
Jenkins, Jerry
Zhou, Bangjun
Torres-Rodríguez, J. Vladimir
Chen, Cindy
Sandor, Laura
Plott, Chris
Yoshinga, Yuko
Daum, Christopher
Qi, Peng
Barry, Kerrie
Lipzen, Anna
Berry, Luke
Pedersen, Connor
Gottilla, Thomas
Foltz, Ashley
Yu, Huihui
O’Malley, Ronan
Zhang, Chi
Devos, Katrien M.
Sigmon, Brandi
Yu, Bin
Obata, Toshihiro
Schmutz, Jeremy
Schnable, James C.
author_facet Sun, Guangchao
Wase, Nishikant
Shu, Shengqiang
Jenkins, Jerry
Zhou, Bangjun
Torres-Rodríguez, J. Vladimir
Chen, Cindy
Sandor, Laura
Plott, Chris
Yoshinga, Yuko
Daum, Christopher
Qi, Peng
Barry, Kerrie
Lipzen, Anna
Berry, Luke
Pedersen, Connor
Gottilla, Thomas
Foltz, Ashley
Yu, Huihui
O’Malley, Ronan
Zhang, Chi
Devos, Katrien M.
Sigmon, Brandi
Yu, Bin
Obata, Toshihiro
Schmutz, Jeremy
Schnable, James C.
author_sort Sun, Guangchao
collection PubMed
description A number of crop wild relatives can tolerate extreme stress to a degree outside the range observed in their domesticated relatives. However, it is unclear whether or how the molecular mechanisms employed by these species can be translated to domesticated crops. Paspalum (Paspalum vaginatum) is a self-incompatible and multiply stress-tolerant wild relative of maize and sorghum. Here, we describe the sequencing and pseudomolecule level assembly of a vegetatively propagated accession of P. vaginatum. Phylogenetic analysis based on 6,151 single-copy syntenic orthologues conserved in 6 related grass species places paspalum as an outgroup of the maize-sorghum clade. In parallel metabolic experiments, paspalum, but neither maize nor sorghum, exhibits a significant increase in trehalose when grown under nutrient-deficit conditions. Inducing trehalose accumulation in maize, imitating the metabolic phenotype of paspalum, results in autophagy dependent increases in biomass accumulation.
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spelling pubmed-97479812022-12-15 Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass Sun, Guangchao Wase, Nishikant Shu, Shengqiang Jenkins, Jerry Zhou, Bangjun Torres-Rodríguez, J. Vladimir Chen, Cindy Sandor, Laura Plott, Chris Yoshinga, Yuko Daum, Christopher Qi, Peng Barry, Kerrie Lipzen, Anna Berry, Luke Pedersen, Connor Gottilla, Thomas Foltz, Ashley Yu, Huihui O’Malley, Ronan Zhang, Chi Devos, Katrien M. Sigmon, Brandi Yu, Bin Obata, Toshihiro Schmutz, Jeremy Schnable, James C. Nat Commun Article A number of crop wild relatives can tolerate extreme stress to a degree outside the range observed in their domesticated relatives. However, it is unclear whether or how the molecular mechanisms employed by these species can be translated to domesticated crops. Paspalum (Paspalum vaginatum) is a self-incompatible and multiply stress-tolerant wild relative of maize and sorghum. Here, we describe the sequencing and pseudomolecule level assembly of a vegetatively propagated accession of P. vaginatum. Phylogenetic analysis based on 6,151 single-copy syntenic orthologues conserved in 6 related grass species places paspalum as an outgroup of the maize-sorghum clade. In parallel metabolic experiments, paspalum, but neither maize nor sorghum, exhibits a significant increase in trehalose when grown under nutrient-deficit conditions. Inducing trehalose accumulation in maize, imitating the metabolic phenotype of paspalum, results in autophagy dependent increases in biomass accumulation. Nature Publishing Group UK 2022-12-13 /pmc/articles/PMC9747981/ /pubmed/36513676 http://dx.doi.org/10.1038/s41467-022-35507-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sun, Guangchao
Wase, Nishikant
Shu, Shengqiang
Jenkins, Jerry
Zhou, Bangjun
Torres-Rodríguez, J. Vladimir
Chen, Cindy
Sandor, Laura
Plott, Chris
Yoshinga, Yuko
Daum, Christopher
Qi, Peng
Barry, Kerrie
Lipzen, Anna
Berry, Luke
Pedersen, Connor
Gottilla, Thomas
Foltz, Ashley
Yu, Huihui
O’Malley, Ronan
Zhang, Chi
Devos, Katrien M.
Sigmon, Brandi
Yu, Bin
Obata, Toshihiro
Schmutz, Jeremy
Schnable, James C.
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
title Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
title_full Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
title_fullStr Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
title_full_unstemmed Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
title_short Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
title_sort genome of paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9747981/
https://www.ncbi.nlm.nih.gov/pubmed/36513676
http://dx.doi.org/10.1038/s41467-022-35507-8
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