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Workflow for health-related and brain data lifecycle

Poor lifestyle leads potentially to chronic diseases and low-grade physical and mental fitness. However, ahead of time, we can measure and analyze multiple aspects of physical and mental health, such as body parameters, health risk factors, degrees of motivation, and the overall willingness to chang...

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Autores principales: Brůha, Petr, Mouček, Roman, Salamon, Jaromír, Vacek, Vítězslav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9748096/
https://www.ncbi.nlm.nih.gov/pubmed/36532611
http://dx.doi.org/10.3389/fdgth.2022.1025086
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author Brůha, Petr
Mouček, Roman
Salamon, Jaromír
Vacek, Vítězslav
author_facet Brůha, Petr
Mouček, Roman
Salamon, Jaromír
Vacek, Vítězslav
author_sort Brůha, Petr
collection PubMed
description Poor lifestyle leads potentially to chronic diseases and low-grade physical and mental fitness. However, ahead of time, we can measure and analyze multiple aspects of physical and mental health, such as body parameters, health risk factors, degrees of motivation, and the overall willingness to change the current lifestyle. In conjunction with data representing human brain activity, we can obtain and identify human health problems resulting from a long-term lifestyle more precisely and, where appropriate, improve the quality and length of human life. Currently, brain and physical health-related data are not commonly collected and evaluated together. However, doing that is supposed to be an interesting and viable concept, especially when followed by a more detailed definition and description of their whole processing lifecycle. Moreover, when best practices are used to store, annotate, analyze, and evaluate such data collections, the necessary infrastructure development and more intense cooperation among scientific teams and laboratories are facilitated. This approach also improves the reproducibility of experimental work. As a result, large collections of physical and brain health-related data could provide a robust basis for better interpretation of a person’s overall health. This work aims to overview and reflect some best practices used within global communities to ensure the reproducibility of experiments, collected datasets and related workflows. These best practices concern, e.g., data lifecycle models, FAIR principles, and definitions and implementations of terminologies and ontologies. Then, an example of how an automated workflow system could be created to support the collection, annotation, storage, analysis, and publication of findings is shown. The Body in Numbers pilot system, also utilizing software engineering best practices, was developed to implement the concept of such an automated workflow system. It is unique just due to the combination of the processing and evaluation of physical and brain (electrophysiological) data. Its implementation is explored in greater detail, and opportunities to use the gained findings and results throughout various application domains are discussed.
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spelling pubmed-97480962022-12-15 Workflow for health-related and brain data lifecycle Brůha, Petr Mouček, Roman Salamon, Jaromír Vacek, Vítězslav Front Digit Health Digital Health Poor lifestyle leads potentially to chronic diseases and low-grade physical and mental fitness. However, ahead of time, we can measure and analyze multiple aspects of physical and mental health, such as body parameters, health risk factors, degrees of motivation, and the overall willingness to change the current lifestyle. In conjunction with data representing human brain activity, we can obtain and identify human health problems resulting from a long-term lifestyle more precisely and, where appropriate, improve the quality and length of human life. Currently, brain and physical health-related data are not commonly collected and evaluated together. However, doing that is supposed to be an interesting and viable concept, especially when followed by a more detailed definition and description of their whole processing lifecycle. Moreover, when best practices are used to store, annotate, analyze, and evaluate such data collections, the necessary infrastructure development and more intense cooperation among scientific teams and laboratories are facilitated. This approach also improves the reproducibility of experimental work. As a result, large collections of physical and brain health-related data could provide a robust basis for better interpretation of a person’s overall health. This work aims to overview and reflect some best practices used within global communities to ensure the reproducibility of experiments, collected datasets and related workflows. These best practices concern, e.g., data lifecycle models, FAIR principles, and definitions and implementations of terminologies and ontologies. Then, an example of how an automated workflow system could be created to support the collection, annotation, storage, analysis, and publication of findings is shown. The Body in Numbers pilot system, also utilizing software engineering best practices, was developed to implement the concept of such an automated workflow system. It is unique just due to the combination of the processing and evaluation of physical and brain (electrophysiological) data. Its implementation is explored in greater detail, and opportunities to use the gained findings and results throughout various application domains are discussed. Frontiers Media S.A. 2022-11-30 /pmc/articles/PMC9748096/ /pubmed/36532611 http://dx.doi.org/10.3389/fdgth.2022.1025086 Text en © 2022 Brůha, Mouček, Salamon and Vacek. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Digital Health
Brůha, Petr
Mouček, Roman
Salamon, Jaromír
Vacek, Vítězslav
Workflow for health-related and brain data lifecycle
title Workflow for health-related and brain data lifecycle
title_full Workflow for health-related and brain data lifecycle
title_fullStr Workflow for health-related and brain data lifecycle
title_full_unstemmed Workflow for health-related and brain data lifecycle
title_short Workflow for health-related and brain data lifecycle
title_sort workflow for health-related and brain data lifecycle
topic Digital Health
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9748096/
https://www.ncbi.nlm.nih.gov/pubmed/36532611
http://dx.doi.org/10.3389/fdgth.2022.1025086
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