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Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer

BACKGROUND: Colorectal cancer (CRC) is a common cancer and has a poor prognosis. The coagulation system and fibrinolysis system are closely related to the progression of malignant tumors and is also related to the immunotherapy of malignant tumors. Herein, we tried to predict survival and the immuno...

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Autores principales: Ma, Yanling, Wang, Bofang, He, Puyi, Qi, Wenbo, Xiang, Ling, Maswikiti, Ewetse Paul, Chen, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9748552/
https://www.ncbi.nlm.nih.gov/pubmed/36532065
http://dx.doi.org/10.3389/fimmu.2022.1023908
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author Ma, Yanling
Wang, Bofang
He, Puyi
Qi, Wenbo
Xiang, Ling
Maswikiti, Ewetse Paul
Chen, Hao
author_facet Ma, Yanling
Wang, Bofang
He, Puyi
Qi, Wenbo
Xiang, Ling
Maswikiti, Ewetse Paul
Chen, Hao
author_sort Ma, Yanling
collection PubMed
description BACKGROUND: Colorectal cancer (CRC) is a common cancer and has a poor prognosis. The coagulation system and fibrinolysis system are closely related to the progression of malignant tumors and is also related to the immunotherapy of malignant tumors. Herein, we tried to predict survival and the immunotherapy effect for patients with CRC using a novel potential prognostic model. METHODS: Through online data of TCGA and GEO, we screened significantly differentially expressed genes (DEGs) to construct a prognostic model, followed by obtaining immune-related genes (IRGs) from the ImmPort database and coagulation- and fibrinolysis-related genes (CFRGs) from the GeneCards database. The predictive power of the model is assessed by Kaplan–Meier survival curves as well as the time-dependent ROC curve. Moreover, univariate and multivariate analyses were conducted for OS using Cox regression models, and the nomogram prognostic model was built. In the end, we further studied the possibility that CXCL8 was associated with immunocyte infiltration or immunotherapy effect and identified it by immunohistochemistry and Western blot. RESULTS: Five DEGs (CXCL8, MMP12, GDF15, SPP1, and NR3C2) were identified as being prognostic for CRC and were selected to establish the prognostic model. Expression of these genes was confirmed in CRC samples using RT-qPCR. Notably, those selected genes, both CFRGs and IRGs, can accurately predict the OS of CRC patients. Furthermore, CXCL8 is highly correlated with the tumor microenvironment and immunotherapy response in CRC. CONCLUSION: Overall, our established IRGPI can very accurately predict the OS of CRC patients. CXCL8 reflects the immune microenvironment and reveals the correlation with immune checkpoints among CRC patients.
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spelling pubmed-97485522022-12-15 Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer Ma, Yanling Wang, Bofang He, Puyi Qi, Wenbo Xiang, Ling Maswikiti, Ewetse Paul Chen, Hao Front Immunol Immunology BACKGROUND: Colorectal cancer (CRC) is a common cancer and has a poor prognosis. The coagulation system and fibrinolysis system are closely related to the progression of malignant tumors and is also related to the immunotherapy of malignant tumors. Herein, we tried to predict survival and the immunotherapy effect for patients with CRC using a novel potential prognostic model. METHODS: Through online data of TCGA and GEO, we screened significantly differentially expressed genes (DEGs) to construct a prognostic model, followed by obtaining immune-related genes (IRGs) from the ImmPort database and coagulation- and fibrinolysis-related genes (CFRGs) from the GeneCards database. The predictive power of the model is assessed by Kaplan–Meier survival curves as well as the time-dependent ROC curve. Moreover, univariate and multivariate analyses were conducted for OS using Cox regression models, and the nomogram prognostic model was built. In the end, we further studied the possibility that CXCL8 was associated with immunocyte infiltration or immunotherapy effect and identified it by immunohistochemistry and Western blot. RESULTS: Five DEGs (CXCL8, MMP12, GDF15, SPP1, and NR3C2) were identified as being prognostic for CRC and were selected to establish the prognostic model. Expression of these genes was confirmed in CRC samples using RT-qPCR. Notably, those selected genes, both CFRGs and IRGs, can accurately predict the OS of CRC patients. Furthermore, CXCL8 is highly correlated with the tumor microenvironment and immunotherapy response in CRC. CONCLUSION: Overall, our established IRGPI can very accurately predict the OS of CRC patients. CXCL8 reflects the immune microenvironment and reveals the correlation with immune checkpoints among CRC patients. Frontiers Media S.A. 2022-11-30 /pmc/articles/PMC9748552/ /pubmed/36532065 http://dx.doi.org/10.3389/fimmu.2022.1023908 Text en Copyright © 2022 Ma, Wang, He, Qi, Xiang, Maswikiti and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Ma, Yanling
Wang, Bofang
He, Puyi
Qi, Wenbo
Xiang, Ling
Maswikiti, Ewetse Paul
Chen, Hao
Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
title Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
title_full Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
title_fullStr Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
title_full_unstemmed Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
title_short Coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
title_sort coagulation- and fibrinolysis-related genes for predicting survival and immunotherapy efficacy in colorectal cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9748552/
https://www.ncbi.nlm.nih.gov/pubmed/36532065
http://dx.doi.org/10.3389/fimmu.2022.1023908
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