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Intermolecular noncovalent interactions with carbon in solution
One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding π*-orbital situated at the Bürgi–Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n → π* interactions, and if it involves a σ* orbital in a linear fashion, then it is kn...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749111/ https://www.ncbi.nlm.nih.gov/pubmed/36545132 http://dx.doi.org/10.1039/d2sc05431k |
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author | Dutta, Juhi Routray, Chinmay Pandey, Shalini Biswal, Himansu S. |
author_facet | Dutta, Juhi Routray, Chinmay Pandey, Shalini Biswal, Himansu S. |
author_sort | Dutta, Juhi |
collection | PubMed |
description | One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding π*-orbital situated at the Bürgi–Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n → π* interactions, and if it involves a σ* orbital in a linear fashion, then it is known as the carbon bond. These NCIs can be intra- or inter-molecular and are usually weak in strength but have a paramount effect on the structure and function of small-molecular crystals and proteins. Surprisingly, the experimental evidence of such interactions in the solution phase is scarce. It is even difficult to determine the interaction energy in the solution. Using NMR spectroscopy aided with molecular dynamics (MD) simulation and high-level quantum mechanical calculations, herein we provide the experimental evidence of intermolecular carbon-centered NCIs in solution. The challenge was to find appropriate heterodimers that could sustain room temperature thermal energy and collisions from the solvent molecules. However, after several trial model compounds, the pyridine-N-oxide:dimethyltetracyanocyclopropane (PNO–DMTCCP) complex was found to be a good candidate for the investigation. NBO analyses show that the PNO:DMTCCP complex is stabilized mainly by intermolecular n → π* interaction when a weaker carbon bond gives extra stability to the complex. From the NMR study, it is observed that the NCIs between DMTCCP and PNO are enthalpy driven with an enthalpy change of −28.12 kJ mol(−1) and dimerization energy of ∼−38 kJ mol(−1) is comparable to the binding energies of a conventional hydrogen-bonded dimer. This study opens up a new strategy to investigate weak intermolecular interactions such as n → π* interaction and carbon bonds in the solution phase. |
format | Online Article Text |
id | pubmed-9749111 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-97491112022-12-20 Intermolecular noncovalent interactions with carbon in solution Dutta, Juhi Routray, Chinmay Pandey, Shalini Biswal, Himansu S. Chem Sci Chemistry One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding π*-orbital situated at the Bürgi–Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n → π* interactions, and if it involves a σ* orbital in a linear fashion, then it is known as the carbon bond. These NCIs can be intra- or inter-molecular and are usually weak in strength but have a paramount effect on the structure and function of small-molecular crystals and proteins. Surprisingly, the experimental evidence of such interactions in the solution phase is scarce. It is even difficult to determine the interaction energy in the solution. Using NMR spectroscopy aided with molecular dynamics (MD) simulation and high-level quantum mechanical calculations, herein we provide the experimental evidence of intermolecular carbon-centered NCIs in solution. The challenge was to find appropriate heterodimers that could sustain room temperature thermal energy and collisions from the solvent molecules. However, after several trial model compounds, the pyridine-N-oxide:dimethyltetracyanocyclopropane (PNO–DMTCCP) complex was found to be a good candidate for the investigation. NBO analyses show that the PNO:DMTCCP complex is stabilized mainly by intermolecular n → π* interaction when a weaker carbon bond gives extra stability to the complex. From the NMR study, it is observed that the NCIs between DMTCCP and PNO are enthalpy driven with an enthalpy change of −28.12 kJ mol(−1) and dimerization energy of ∼−38 kJ mol(−1) is comparable to the binding energies of a conventional hydrogen-bonded dimer. This study opens up a new strategy to investigate weak intermolecular interactions such as n → π* interaction and carbon bonds in the solution phase. The Royal Society of Chemistry 2022-11-21 /pmc/articles/PMC9749111/ /pubmed/36545132 http://dx.doi.org/10.1039/d2sc05431k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Dutta, Juhi Routray, Chinmay Pandey, Shalini Biswal, Himansu S. Intermolecular noncovalent interactions with carbon in solution |
title | Intermolecular noncovalent interactions with carbon in solution |
title_full | Intermolecular noncovalent interactions with carbon in solution |
title_fullStr | Intermolecular noncovalent interactions with carbon in solution |
title_full_unstemmed | Intermolecular noncovalent interactions with carbon in solution |
title_short | Intermolecular noncovalent interactions with carbon in solution |
title_sort | intermolecular noncovalent interactions with carbon in solution |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749111/ https://www.ncbi.nlm.nih.gov/pubmed/36545132 http://dx.doi.org/10.1039/d2sc05431k |
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