Cargando…

Intermolecular noncovalent interactions with carbon in solution

One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding π*-orbital situated at the Bürgi–Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n → π* interactions, and if it involves a σ* orbital in a linear fashion, then it is kn...

Descripción completa

Detalles Bibliográficos
Autores principales: Dutta, Juhi, Routray, Chinmay, Pandey, Shalini, Biswal, Himansu S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749111/
https://www.ncbi.nlm.nih.gov/pubmed/36545132
http://dx.doi.org/10.1039/d2sc05431k
_version_ 1784849975246585856
author Dutta, Juhi
Routray, Chinmay
Pandey, Shalini
Biswal, Himansu S.
author_facet Dutta, Juhi
Routray, Chinmay
Pandey, Shalini
Biswal, Himansu S.
author_sort Dutta, Juhi
collection PubMed
description One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding π*-orbital situated at the Bürgi–Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n → π* interactions, and if it involves a σ* orbital in a linear fashion, then it is known as the carbon bond. These NCIs can be intra- or inter-molecular and are usually weak in strength but have a paramount effect on the structure and function of small-molecular crystals and proteins. Surprisingly, the experimental evidence of such interactions in the solution phase is scarce. It is even difficult to determine the interaction energy in the solution. Using NMR spectroscopy aided with molecular dynamics (MD) simulation and high-level quantum mechanical calculations, herein we provide the experimental evidence of intermolecular carbon-centered NCIs in solution. The challenge was to find appropriate heterodimers that could sustain room temperature thermal energy and collisions from the solvent molecules. However, after several trial model compounds, the pyridine-N-oxide:dimethyltetracyanocyclopropane (PNO–DMTCCP) complex was found to be a good candidate for the investigation. NBO analyses show that the PNO:DMTCCP complex is stabilized mainly by intermolecular n → π* interaction when a weaker carbon bond gives extra stability to the complex. From the NMR study, it is observed that the NCIs between DMTCCP and PNO are enthalpy driven with an enthalpy change of −28.12 kJ mol(−1) and dimerization energy of ∼−38 kJ mol(−1) is comparable to the binding energies of a conventional hydrogen-bonded dimer. This study opens up a new strategy to investigate weak intermolecular interactions such as n → π* interaction and carbon bonds in the solution phase.
format Online
Article
Text
id pubmed-9749111
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher The Royal Society of Chemistry
record_format MEDLINE/PubMed
spelling pubmed-97491112022-12-20 Intermolecular noncovalent interactions with carbon in solution Dutta, Juhi Routray, Chinmay Pandey, Shalini Biswal, Himansu S. Chem Sci Chemistry One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding π*-orbital situated at the Bürgi–Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n → π* interactions, and if it involves a σ* orbital in a linear fashion, then it is known as the carbon bond. These NCIs can be intra- or inter-molecular and are usually weak in strength but have a paramount effect on the structure and function of small-molecular crystals and proteins. Surprisingly, the experimental evidence of such interactions in the solution phase is scarce. It is even difficult to determine the interaction energy in the solution. Using NMR spectroscopy aided with molecular dynamics (MD) simulation and high-level quantum mechanical calculations, herein we provide the experimental evidence of intermolecular carbon-centered NCIs in solution. The challenge was to find appropriate heterodimers that could sustain room temperature thermal energy and collisions from the solvent molecules. However, after several trial model compounds, the pyridine-N-oxide:dimethyltetracyanocyclopropane (PNO–DMTCCP) complex was found to be a good candidate for the investigation. NBO analyses show that the PNO:DMTCCP complex is stabilized mainly by intermolecular n → π* interaction when a weaker carbon bond gives extra stability to the complex. From the NMR study, it is observed that the NCIs between DMTCCP and PNO are enthalpy driven with an enthalpy change of −28.12 kJ mol(−1) and dimerization energy of ∼−38 kJ mol(−1) is comparable to the binding energies of a conventional hydrogen-bonded dimer. This study opens up a new strategy to investigate weak intermolecular interactions such as n → π* interaction and carbon bonds in the solution phase. The Royal Society of Chemistry 2022-11-21 /pmc/articles/PMC9749111/ /pubmed/36545132 http://dx.doi.org/10.1039/d2sc05431k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Dutta, Juhi
Routray, Chinmay
Pandey, Shalini
Biswal, Himansu S.
Intermolecular noncovalent interactions with carbon in solution
title Intermolecular noncovalent interactions with carbon in solution
title_full Intermolecular noncovalent interactions with carbon in solution
title_fullStr Intermolecular noncovalent interactions with carbon in solution
title_full_unstemmed Intermolecular noncovalent interactions with carbon in solution
title_short Intermolecular noncovalent interactions with carbon in solution
title_sort intermolecular noncovalent interactions with carbon in solution
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749111/
https://www.ncbi.nlm.nih.gov/pubmed/36545132
http://dx.doi.org/10.1039/d2sc05431k
work_keys_str_mv AT duttajuhi intermolecularnoncovalentinteractionswithcarboninsolution
AT routraychinmay intermolecularnoncovalentinteractionswithcarboninsolution
AT pandeyshalini intermolecularnoncovalentinteractionswithcarboninsolution
AT biswalhimansus intermolecularnoncovalentinteractionswithcarboninsolution