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Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood

Risk and risk–benefit assessments of food are complex exercises, in which access to and use of several disconnected individual stand‐alone databases is required to obtain hazard and exposure information. Data obtained from such databases ideally should be in line with the FAIR principles, i.e. the d...

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Autores principales: Pineda‐Pampliega, Javier, Bernhard, Annette, Hannisdal, Rita, Ørnsrud, Robin, Mathisen, Gro Haarklou, Solstad, Gisle, Rasinger, Josef Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749436/
https://www.ncbi.nlm.nih.gov/pubmed/36531271
http://dx.doi.org/10.2903/j.efsa.2022.e200917
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author Pineda‐Pampliega, Javier
Bernhard, Annette
Hannisdal, Rita
Ørnsrud, Robin
Mathisen, Gro Haarklou
Solstad, Gisle
Rasinger, Josef Daniel
author_facet Pineda‐Pampliega, Javier
Bernhard, Annette
Hannisdal, Rita
Ørnsrud, Robin
Mathisen, Gro Haarklou
Solstad, Gisle
Rasinger, Josef Daniel
author_sort Pineda‐Pampliega, Javier
collection PubMed
description Risk and risk–benefit assessments of food are complex exercises, in which access to and use of several disconnected individual stand‐alone databases is required to obtain hazard and exposure information. Data obtained from such databases ideally should be in line with the FAIR principles, i.e. the data must be Findable, Accessible, Interoperable and Reusable. However, often cases are encountered when one or more of these principles are not followed. In this project, we set out to assess if existing commonly used databases in risk assessment are in line with the FAIR principles. We also investigated how access, interoperability and reusability of data could be improved. We used the OpenFoodTox and the Seafood database as examples and showed how commonly used freely available open‐source tools and repositories can be implemented in the data extraction process of risk assessments to increase data reusability and crosstalk across different databases.
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spelling pubmed-97494362022-12-15 Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood Pineda‐Pampliega, Javier Bernhard, Annette Hannisdal, Rita Ørnsrud, Robin Mathisen, Gro Haarklou Solstad, Gisle Rasinger, Josef Daniel EFSA J Eu‐fora Series 5 Risk and risk–benefit assessments of food are complex exercises, in which access to and use of several disconnected individual stand‐alone databases is required to obtain hazard and exposure information. Data obtained from such databases ideally should be in line with the FAIR principles, i.e. the data must be Findable, Accessible, Interoperable and Reusable. However, often cases are encountered when one or more of these principles are not followed. In this project, we set out to assess if existing commonly used databases in risk assessment are in line with the FAIR principles. We also investigated how access, interoperability and reusability of data could be improved. We used the OpenFoodTox and the Seafood database as examples and showed how commonly used freely available open‐source tools and repositories can be implemented in the data extraction process of risk assessments to increase data reusability and crosstalk across different databases. John Wiley and Sons Inc. 2022-12-14 /pmc/articles/PMC9749436/ /pubmed/36531271 http://dx.doi.org/10.2903/j.efsa.2022.e200917 Text en © 2022 Wiley‐VCH Verlag GmbH & Co. KgaA on behalf of the European Food Safety Authority. https://creativecommons.org/licenses/by-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nd/4.0/ (https://creativecommons.org/licenses/by-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited and no modifications or adaptations are made.
spellingShingle Eu‐fora Series 5
Pineda‐Pampliega, Javier
Bernhard, Annette
Hannisdal, Rita
Ørnsrud, Robin
Mathisen, Gro Haarklou
Solstad, Gisle
Rasinger, Josef Daniel
Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood
title Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood
title_full Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood
title_fullStr Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood
title_full_unstemmed Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood
title_short Developing a framework for open and FAIR data management practices for next generation risk‐ and benefit assessment of fish and seafood
title_sort developing a framework for open and fair data management practices for next generation risk‐ and benefit assessment of fish and seafood
topic Eu‐fora Series 5
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749436/
https://www.ncbi.nlm.nih.gov/pubmed/36531271
http://dx.doi.org/10.2903/j.efsa.2022.e200917
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