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Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate
Prospective Anti-viral compound 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate (DPDS) was synthesized and characterized using FT-IR, FT-Raman, UV and NMR spectra. To escort the experimental results, computational methods were performed using B3LYP with 6-311G (d, p) basis set expending Gaussian09...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749904/ https://www.ncbi.nlm.nih.gov/pubmed/36532120 http://dx.doi.org/10.1016/j.molstruc.2021.131165 |
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author | Dexlin, X.D. Divya Tarika, J.D. Deephlin Kumar, S. Madhan Mariappan, A. Beaula, T. Joselin |
author_facet | Dexlin, X.D. Divya Tarika, J.D. Deephlin Kumar, S. Madhan Mariappan, A. Beaula, T. Joselin |
author_sort | Dexlin, X.D. Divya |
collection | PubMed |
description | Prospective Anti-viral compound 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate (DPDS) was synthesized and characterized using FT-IR, FT-Raman, UV and NMR spectra. To escort the experimental results, computational methods were performed using B3LYP with 6-311G (d, p) basis set expending Gaussian09w package to attain geometry of the molecule. Vibrational assignments for all the vibrational modes have been made of PED results obtained from SQM method. On contrary, FMO analysis, global chemical reactivity descriptors, Aromaticity and Natural charge analysis were studied. Molecular stability and bond strength have been inquired by executing NBO analysis. Topological features of DPDS were intended by MEP, ELF and LOL maps. UV–vis spectrum was predicted by TD-DFT method in gaseous phase and compared with the experimental spectrum for displaying the involved electronic transitions in the compound. The interactions within the DPDS molecule were investigated via RDG analysis. Molecular docking was performed with SARS-CoV-2 proteins and docking parameters were obtained. Drug likeness was carried out based on Lipinski's rule of five and the ADMET factors were also predicted. |
format | Online Article Text |
id | pubmed-9749904 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97499042022-12-14 Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate Dexlin, X.D. Divya Tarika, J.D. Deephlin Kumar, S. Madhan Mariappan, A. Beaula, T. Joselin J Mol Struct Article Prospective Anti-viral compound 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate (DPDS) was synthesized and characterized using FT-IR, FT-Raman, UV and NMR spectra. To escort the experimental results, computational methods were performed using B3LYP with 6-311G (d, p) basis set expending Gaussian09w package to attain geometry of the molecule. Vibrational assignments for all the vibrational modes have been made of PED results obtained from SQM method. On contrary, FMO analysis, global chemical reactivity descriptors, Aromaticity and Natural charge analysis were studied. Molecular stability and bond strength have been inquired by executing NBO analysis. Topological features of DPDS were intended by MEP, ELF and LOL maps. UV–vis spectrum was predicted by TD-DFT method in gaseous phase and compared with the experimental spectrum for displaying the involved electronic transitions in the compound. The interactions within the DPDS molecule were investigated via RDG analysis. Molecular docking was performed with SARS-CoV-2 proteins and docking parameters were obtained. Drug likeness was carried out based on Lipinski's rule of five and the ADMET factors were also predicted. Elsevier B.V. 2021-12-15 2021-07-22 /pmc/articles/PMC9749904/ /pubmed/36532120 http://dx.doi.org/10.1016/j.molstruc.2021.131165 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Dexlin, X.D. Divya Tarika, J.D. Deephlin Kumar, S. Madhan Mariappan, A. Beaula, T. Joselin Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate |
title | Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate |
title_full | Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate |
title_fullStr | Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate |
title_full_unstemmed | Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate |
title_short | Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate |
title_sort | synthesis and dft computations on structural, electronic and vibrational spectra, rdg analysis and molecular docking of novel anti covid-19 molecule 3, 5 dimethyl pyrazolium 3, 5 dichloro salicylate |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9749904/ https://www.ncbi.nlm.nih.gov/pubmed/36532120 http://dx.doi.org/10.1016/j.molstruc.2021.131165 |
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