Cargando…

A transformer-based generative adversarial network for brain tumor segmentation

Brain tumor segmentation remains a challenge in medical image segmentation tasks. With the application of transformer in various computer vision tasks, transformer blocks show the capability of learning long-distance dependency in global space, which is complementary to CNNs. In this paper, we propo...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Liqun, Zhu, Enjun, Chen, Long, Wang, Zhaoyang, Chai, Senchun, Zhang, Baihai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9750177/
https://www.ncbi.nlm.nih.gov/pubmed/36532274
http://dx.doi.org/10.3389/fnins.2022.1054948
_version_ 1784850196696399872
author Huang, Liqun
Zhu, Enjun
Chen, Long
Wang, Zhaoyang
Chai, Senchun
Zhang, Baihai
author_facet Huang, Liqun
Zhu, Enjun
Chen, Long
Wang, Zhaoyang
Chai, Senchun
Zhang, Baihai
author_sort Huang, Liqun
collection PubMed
description Brain tumor segmentation remains a challenge in medical image segmentation tasks. With the application of transformer in various computer vision tasks, transformer blocks show the capability of learning long-distance dependency in global space, which is complementary to CNNs. In this paper, we proposed a novel transformer-based generative adversarial network to automatically segment brain tumors with multi-modalities MRI. Our architecture consists of a generator and a discriminator, which is trained in min–max game progress. The generator is based on a typical “U-shaped” encoder–decoder architecture, whose bottom layer is composed of transformer blocks with Resnet. Besides, the generator is trained with deep supervision technology. The discriminator we designed is a CNN-based network with multi-scale L(1) loss, which is proved to be effective for medical semantic image segmentation. To validate the effectiveness of our method, we conducted exclusive experiments on BRATS2015 dataset, achieving comparable or better performance than previous state-of-the-art methods. On additional datasets, including BRATS2018 and BRATS2020, experimental results prove that our technique is capable of generalizing successfully.
format Online
Article
Text
id pubmed-9750177
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-97501772022-12-15 A transformer-based generative adversarial network for brain tumor segmentation Huang, Liqun Zhu, Enjun Chen, Long Wang, Zhaoyang Chai, Senchun Zhang, Baihai Front Neurosci Neuroscience Brain tumor segmentation remains a challenge in medical image segmentation tasks. With the application of transformer in various computer vision tasks, transformer blocks show the capability of learning long-distance dependency in global space, which is complementary to CNNs. In this paper, we proposed a novel transformer-based generative adversarial network to automatically segment brain tumors with multi-modalities MRI. Our architecture consists of a generator and a discriminator, which is trained in min–max game progress. The generator is based on a typical “U-shaped” encoder–decoder architecture, whose bottom layer is composed of transformer blocks with Resnet. Besides, the generator is trained with deep supervision technology. The discriminator we designed is a CNN-based network with multi-scale L(1) loss, which is proved to be effective for medical semantic image segmentation. To validate the effectiveness of our method, we conducted exclusive experiments on BRATS2015 dataset, achieving comparable or better performance than previous state-of-the-art methods. On additional datasets, including BRATS2018 and BRATS2020, experimental results prove that our technique is capable of generalizing successfully. Frontiers Media S.A. 2022-11-30 /pmc/articles/PMC9750177/ /pubmed/36532274 http://dx.doi.org/10.3389/fnins.2022.1054948 Text en Copyright © 2022 Huang, Zhu, Chen, Wang, Chai and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Huang, Liqun
Zhu, Enjun
Chen, Long
Wang, Zhaoyang
Chai, Senchun
Zhang, Baihai
A transformer-based generative adversarial network for brain tumor segmentation
title A transformer-based generative adversarial network for brain tumor segmentation
title_full A transformer-based generative adversarial network for brain tumor segmentation
title_fullStr A transformer-based generative adversarial network for brain tumor segmentation
title_full_unstemmed A transformer-based generative adversarial network for brain tumor segmentation
title_short A transformer-based generative adversarial network for brain tumor segmentation
title_sort transformer-based generative adversarial network for brain tumor segmentation
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9750177/
https://www.ncbi.nlm.nih.gov/pubmed/36532274
http://dx.doi.org/10.3389/fnins.2022.1054948
work_keys_str_mv AT huangliqun atransformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT zhuenjun atransformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT chenlong atransformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT wangzhaoyang atransformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT chaisenchun atransformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT zhangbaihai atransformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT huangliqun transformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT zhuenjun transformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT chenlong transformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT wangzhaoyang transformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT chaisenchun transformerbasedgenerativeadversarialnetworkforbraintumorsegmentation
AT zhangbaihai transformerbasedgenerativeadversarialnetworkforbraintumorsegmentation