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Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking

To investigate the mechanism of action of Datura metel in the treatment of sinus bradycardia based on network pharmacology and molecular docking. METHODS: The active ingredients and targets of Datura metel were collected by TCMSP database, and the Cytoscape software was used to map to show the inter...

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Autores principales: Yang, Feifei, Liu, Pihong, Zhang, Xiaosi, Zhang, Zhe, Lu, Hao, Geng, Naizhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9750526/
https://www.ncbi.nlm.nih.gov/pubmed/36626429
http://dx.doi.org/10.1097/MD.0000000000032190
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author Yang, Feifei
Liu, Pihong
Zhang, Xiaosi
Zhang, Zhe
Lu, Hao
Geng, Naizhi
author_facet Yang, Feifei
Liu, Pihong
Zhang, Xiaosi
Zhang, Zhe
Lu, Hao
Geng, Naizhi
author_sort Yang, Feifei
collection PubMed
description To investigate the mechanism of action of Datura metel in the treatment of sinus bradycardia based on network pharmacology and molecular docking. METHODS: The active ingredients and targets of Datura metel were collected by TCMSP database, and the Cytoscape software was used to map to show the interrelationship. Use 5 databases: GeneCards, PharmGKB, OMIM, DisGeNET, and Drugbank to obtain targets related to sinus bradycardia; establish a protein-to-protein interaction network with the help of the STRING platform; GO and Kyoto Encyclopedia of Genes and Genomes analysis of the selected core targets using the Metascape platform; Finally, the AutoDock platform was used for molecular docking and the results were displayed through Pymol. RESULTS: 27 kinds of active ingredients of the drug were screened, including 10 kinds of main ingredients; 198 drug targets and 1059 disease targets. There are 54 targets of action in the treatment of sinus bradycardia, of which 19 targets such as AKT1, IL6, TNF, and VEGFA are the core targets of Datura metel in the treatment of sinus bradycardia. Kyoto Encyclopedia of Genes and Genomes obtained 18 results suggesting that AGE-RAGE, hepatitis C, relaxin, and JAK-STAT may be key signaling pathways. Molecular docking shows that most components of the drug have good docking ability with the core target, indicating that the prediction results have certain reliability. CONCLUSION: This study preliminarily explores the potential active ingredients and possible mechanisms of action of Datura metel in the treatment of sinus bradycardia and provides a basis for in-depth investigation of its medicinal material basis and mechanism of action.
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spelling pubmed-97505262022-12-28 Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking Yang, Feifei Liu, Pihong Zhang, Xiaosi Zhang, Zhe Lu, Hao Geng, Naizhi Medicine (Baltimore) 3800 To investigate the mechanism of action of Datura metel in the treatment of sinus bradycardia based on network pharmacology and molecular docking. METHODS: The active ingredients and targets of Datura metel were collected by TCMSP database, and the Cytoscape software was used to map to show the interrelationship. Use 5 databases: GeneCards, PharmGKB, OMIM, DisGeNET, and Drugbank to obtain targets related to sinus bradycardia; establish a protein-to-protein interaction network with the help of the STRING platform; GO and Kyoto Encyclopedia of Genes and Genomes analysis of the selected core targets using the Metascape platform; Finally, the AutoDock platform was used for molecular docking and the results were displayed through Pymol. RESULTS: 27 kinds of active ingredients of the drug were screened, including 10 kinds of main ingredients; 198 drug targets and 1059 disease targets. There are 54 targets of action in the treatment of sinus bradycardia, of which 19 targets such as AKT1, IL6, TNF, and VEGFA are the core targets of Datura metel in the treatment of sinus bradycardia. Kyoto Encyclopedia of Genes and Genomes obtained 18 results suggesting that AGE-RAGE, hepatitis C, relaxin, and JAK-STAT may be key signaling pathways. Molecular docking shows that most components of the drug have good docking ability with the core target, indicating that the prediction results have certain reliability. CONCLUSION: This study preliminarily explores the potential active ingredients and possible mechanisms of action of Datura metel in the treatment of sinus bradycardia and provides a basis for in-depth investigation of its medicinal material basis and mechanism of action. Lippincott Williams & Wilkins 2022-12-09 /pmc/articles/PMC9750526/ /pubmed/36626429 http://dx.doi.org/10.1097/MD.0000000000032190 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 3800
Yang, Feifei
Liu, Pihong
Zhang, Xiaosi
Zhang, Zhe
Lu, Hao
Geng, Naizhi
Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking
title Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking
title_full Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking
title_fullStr Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking
title_full_unstemmed Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking
title_short Mechanism of Datura metel on sinus bradycardia based on network pharmacology and molecular docking
title_sort mechanism of datura metel on sinus bradycardia based on network pharmacology and molecular docking
topic 3800
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9750526/
https://www.ncbi.nlm.nih.gov/pubmed/36626429
http://dx.doi.org/10.1097/MD.0000000000032190
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