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Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution

Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and...

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Autores principales: Rathmann, Isabel, Förster, Mona, Yüksel, Melih, Horst, Lucas, Petrungaro, Gabriela, Bollenbach, Tobias, Maier, Berenike
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9751276/
https://www.ncbi.nlm.nih.gov/pubmed/36224268
http://dx.doi.org/10.1038/s41396-022-01325-5
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author Rathmann, Isabel
Förster, Mona
Yüksel, Melih
Horst, Lucas
Petrungaro, Gabriela
Bollenbach, Tobias
Maier, Berenike
author_facet Rathmann, Isabel
Förster, Mona
Yüksel, Melih
Horst, Lucas
Petrungaro, Gabriela
Bollenbach, Tobias
Maier, Berenike
author_sort Rathmann, Isabel
collection PubMed
description Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and test whether they predict in which condition transformation is beneficial. To determine the DFEs, we generate hybrid libraries between the recipient Bacillus subtilis and different donor species and measure the selection coefficient of each hybrid strain. In complex medium, the donor Bacillus vallismortis confers larger fitness effects than the more closely related donor Bacillus spizizenii. For both donors, the DFEs show strong effect beneficial transfers, indicating potential for fast adaptive evolution. While some transfers of B. vallismortis DNA show pleiotropic effects, various transfers are beneficial only under a single growth condition, indicating that the recipient can benefit from a variety of donor genes to adapt to varying growth conditions. We scrutinize the predictive value of the DFEs by laboratory evolution under different growth conditions and show that the DFEs correctly predict the condition at which transformation confers a benefit. We conclude that transformation has a strong potential for speeding up adaptation to varying environments by profiting from a gene pool shared between closely related species.
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spelling pubmed-97512762022-12-16 Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution Rathmann, Isabel Förster, Mona Yüksel, Melih Horst, Lucas Petrungaro, Gabriela Bollenbach, Tobias Maier, Berenike ISME J Article Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and test whether they predict in which condition transformation is beneficial. To determine the DFEs, we generate hybrid libraries between the recipient Bacillus subtilis and different donor species and measure the selection coefficient of each hybrid strain. In complex medium, the donor Bacillus vallismortis confers larger fitness effects than the more closely related donor Bacillus spizizenii. For both donors, the DFEs show strong effect beneficial transfers, indicating potential for fast adaptive evolution. While some transfers of B. vallismortis DNA show pleiotropic effects, various transfers are beneficial only under a single growth condition, indicating that the recipient can benefit from a variety of donor genes to adapt to varying growth conditions. We scrutinize the predictive value of the DFEs by laboratory evolution under different growth conditions and show that the DFEs correctly predict the condition at which transformation confers a benefit. We conclude that transformation has a strong potential for speeding up adaptation to varying environments by profiting from a gene pool shared between closely related species. Nature Publishing Group UK 2022-10-12 2023-01 /pmc/articles/PMC9751276/ /pubmed/36224268 http://dx.doi.org/10.1038/s41396-022-01325-5 Text en © The Author(s) 2022, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Rathmann, Isabel
Förster, Mona
Yüksel, Melih
Horst, Lucas
Petrungaro, Gabriela
Bollenbach, Tobias
Maier, Berenike
Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
title Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
title_full Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
title_fullStr Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
title_full_unstemmed Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
title_short Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
title_sort distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9751276/
https://www.ncbi.nlm.nih.gov/pubmed/36224268
http://dx.doi.org/10.1038/s41396-022-01325-5
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