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Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
Drought tolerance and quality stability are important indicators to evaluate the stress tolerance of tea germplasm resources. The traditional screening method of drought resistant germplasm is mainly to evaluate by detecting physiological and biochemical indicators of tea plants under drought stress...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9751484/ https://www.ncbi.nlm.nih.gov/pubmed/36531409 http://dx.doi.org/10.3389/fpls.2022.1048442 |
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author | Chen, Sizhou Shen, Jiazhi Fan, Kai Qian, Wenjun Gu, Honglian Li, Yuchen Zhang, Jie Han, Xiao Wang, Yu Ding, Zhaotang |
author_facet | Chen, Sizhou Shen, Jiazhi Fan, Kai Qian, Wenjun Gu, Honglian Li, Yuchen Zhang, Jie Han, Xiao Wang, Yu Ding, Zhaotang |
author_sort | Chen, Sizhou |
collection | PubMed |
description | Drought tolerance and quality stability are important indicators to evaluate the stress tolerance of tea germplasm resources. The traditional screening method of drought resistant germplasm is mainly to evaluate by detecting physiological and biochemical indicators of tea plants under drought stresses. However, the methods are not only time consuming but also destructive. In this study, hyperspectral images of tea drought phenotypes were obtained and modeled with related physiological indicators. The results showed that: (1) the information contents of malondialdehyde, soluble sugar and total polyphenol were 0.21, 0.209 and 0.227 respectively, and the drought tolerance coefficient (DTC) index of each tea variety was between 0.069 and 0.81; (2) the comprehensive drought tolerance of different varieties were (from strong to weak): QN36, SCZ, ZC108, JX, JGY, XY10, QN1, MS9, QN38, and QN21; (3) by using SVM, RF and PLSR to model DTC (drought tolerance coefficient) data, the best prediction model was selected as MSC-2D-UVE-SVM (R(2) = 0.77, RMSE = 0.073, MAPE = 0.16) for drought tolerance of tea germplasm resources, named Tea-DTC model. Therefore, the Tea-DTC model based on hyperspectral machine-learning technology can be used as a new screening method for evaluating tea germplasm resources with drought tolerance. |
format | Online Article Text |
id | pubmed-9751484 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97514842022-12-16 Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance Chen, Sizhou Shen, Jiazhi Fan, Kai Qian, Wenjun Gu, Honglian Li, Yuchen Zhang, Jie Han, Xiao Wang, Yu Ding, Zhaotang Front Plant Sci Plant Science Drought tolerance and quality stability are important indicators to evaluate the stress tolerance of tea germplasm resources. The traditional screening method of drought resistant germplasm is mainly to evaluate by detecting physiological and biochemical indicators of tea plants under drought stresses. However, the methods are not only time consuming but also destructive. In this study, hyperspectral images of tea drought phenotypes were obtained and modeled with related physiological indicators. The results showed that: (1) the information contents of malondialdehyde, soluble sugar and total polyphenol were 0.21, 0.209 and 0.227 respectively, and the drought tolerance coefficient (DTC) index of each tea variety was between 0.069 and 0.81; (2) the comprehensive drought tolerance of different varieties were (from strong to weak): QN36, SCZ, ZC108, JX, JGY, XY10, QN1, MS9, QN38, and QN21; (3) by using SVM, RF and PLSR to model DTC (drought tolerance coefficient) data, the best prediction model was selected as MSC-2D-UVE-SVM (R(2) = 0.77, RMSE = 0.073, MAPE = 0.16) for drought tolerance of tea germplasm resources, named Tea-DTC model. Therefore, the Tea-DTC model based on hyperspectral machine-learning technology can be used as a new screening method for evaluating tea germplasm resources with drought tolerance. Frontiers Media S.A. 2022-12-01 /pmc/articles/PMC9751484/ /pubmed/36531409 http://dx.doi.org/10.3389/fpls.2022.1048442 Text en Copyright © 2022 Chen, Shen, Fan, Qian, Gu, Li, Zhang, Han, Wang and Ding https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Chen, Sizhou Shen, Jiazhi Fan, Kai Qian, Wenjun Gu, Honglian Li, Yuchen Zhang, Jie Han, Xiao Wang, Yu Ding, Zhaotang Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
title | Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
title_full | Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
title_fullStr | Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
title_full_unstemmed | Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
title_short | Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
title_sort | hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9751484/ https://www.ncbi.nlm.nih.gov/pubmed/36531409 http://dx.doi.org/10.3389/fpls.2022.1048442 |
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