Cargando…

Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance

Drought tolerance and quality stability are important indicators to evaluate the stress tolerance of tea germplasm resources. The traditional screening method of drought resistant germplasm is mainly to evaluate by detecting physiological and biochemical indicators of tea plants under drought stress...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Sizhou, Shen, Jiazhi, Fan, Kai, Qian, Wenjun, Gu, Honglian, Li, Yuchen, Zhang, Jie, Han, Xiao, Wang, Yu, Ding, Zhaotang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9751484/
https://www.ncbi.nlm.nih.gov/pubmed/36531409
http://dx.doi.org/10.3389/fpls.2022.1048442
_version_ 1784850481849303040
author Chen, Sizhou
Shen, Jiazhi
Fan, Kai
Qian, Wenjun
Gu, Honglian
Li, Yuchen
Zhang, Jie
Han, Xiao
Wang, Yu
Ding, Zhaotang
author_facet Chen, Sizhou
Shen, Jiazhi
Fan, Kai
Qian, Wenjun
Gu, Honglian
Li, Yuchen
Zhang, Jie
Han, Xiao
Wang, Yu
Ding, Zhaotang
author_sort Chen, Sizhou
collection PubMed
description Drought tolerance and quality stability are important indicators to evaluate the stress tolerance of tea germplasm resources. The traditional screening method of drought resistant germplasm is mainly to evaluate by detecting physiological and biochemical indicators of tea plants under drought stresses. However, the methods are not only time consuming but also destructive. In this study, hyperspectral images of tea drought phenotypes were obtained and modeled with related physiological indicators. The results showed that: (1) the information contents of malondialdehyde, soluble sugar and total polyphenol were 0.21, 0.209 and 0.227 respectively, and the drought tolerance coefficient (DTC) index of each tea variety was between 0.069 and 0.81; (2) the comprehensive drought tolerance of different varieties were (from strong to weak): QN36, SCZ, ZC108, JX, JGY, XY10, QN1, MS9, QN38, and QN21; (3) by using SVM, RF and PLSR to model DTC (drought tolerance coefficient) data, the best prediction model was selected as MSC-2D-UVE-SVM (R(2) = 0.77, RMSE = 0.073, MAPE = 0.16) for drought tolerance of tea germplasm resources, named Tea-DTC model. Therefore, the Tea-DTC model based on hyperspectral machine-learning technology can be used as a new screening method for evaluating tea germplasm resources with drought tolerance.
format Online
Article
Text
id pubmed-9751484
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-97514842022-12-16 Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance Chen, Sizhou Shen, Jiazhi Fan, Kai Qian, Wenjun Gu, Honglian Li, Yuchen Zhang, Jie Han, Xiao Wang, Yu Ding, Zhaotang Front Plant Sci Plant Science Drought tolerance and quality stability are important indicators to evaluate the stress tolerance of tea germplasm resources. The traditional screening method of drought resistant germplasm is mainly to evaluate by detecting physiological and biochemical indicators of tea plants under drought stresses. However, the methods are not only time consuming but also destructive. In this study, hyperspectral images of tea drought phenotypes were obtained and modeled with related physiological indicators. The results showed that: (1) the information contents of malondialdehyde, soluble sugar and total polyphenol were 0.21, 0.209 and 0.227 respectively, and the drought tolerance coefficient (DTC) index of each tea variety was between 0.069 and 0.81; (2) the comprehensive drought tolerance of different varieties were (from strong to weak): QN36, SCZ, ZC108, JX, JGY, XY10, QN1, MS9, QN38, and QN21; (3) by using SVM, RF and PLSR to model DTC (drought tolerance coefficient) data, the best prediction model was selected as MSC-2D-UVE-SVM (R(2) = 0.77, RMSE = 0.073, MAPE = 0.16) for drought tolerance of tea germplasm resources, named Tea-DTC model. Therefore, the Tea-DTC model based on hyperspectral machine-learning technology can be used as a new screening method for evaluating tea germplasm resources with drought tolerance. Frontiers Media S.A. 2022-12-01 /pmc/articles/PMC9751484/ /pubmed/36531409 http://dx.doi.org/10.3389/fpls.2022.1048442 Text en Copyright © 2022 Chen, Shen, Fan, Qian, Gu, Li, Zhang, Han, Wang and Ding https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Chen, Sizhou
Shen, Jiazhi
Fan, Kai
Qian, Wenjun
Gu, Honglian
Li, Yuchen
Zhang, Jie
Han, Xiao
Wang, Yu
Ding, Zhaotang
Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
title Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
title_full Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
title_fullStr Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
title_full_unstemmed Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
title_short Hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
title_sort hyperspectral machine-learning model for screening tea germplasm resources with drought tolerance
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9751484/
https://www.ncbi.nlm.nih.gov/pubmed/36531409
http://dx.doi.org/10.3389/fpls.2022.1048442
work_keys_str_mv AT chensizhou hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT shenjiazhi hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT fankai hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT qianwenjun hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT guhonglian hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT liyuchen hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT zhangjie hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT hanxiao hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT wangyu hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance
AT dingzhaotang hyperspectralmachinelearningmodelforscreeningteagermplasmresourceswithdroughttolerance