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494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations

BACKGROUND: Bacterial constituents of the intestinal microbiota can contribute to local and systemic inflammatory diseases. Crohn's disease (CD), a type of inflammatory bowel disease, can result in extraintestinal manifestations (EIM) including peripheral (CD-SpA) and axial spondyloarthritis (C...

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Autores principales: Maldarelli, Grace A, Metz, Maeva, Funez-dePagnier, Gabriela, Lavergne, Alexa, Lai, Daniel, Chang, Adrienne, Malik, Fardina, de Vlaminck, Iwijn, Longman, Randy S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9752134/
http://dx.doi.org/10.1093/ofid/ofac492.552
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author Maldarelli, Grace A
Metz, Maeva
Funez-dePagnier, Gabriela
Lavergne, Alexa
Lai, Daniel
Chang, Adrienne
Malik, Fardina
de Vlaminck, Iwijn
Longman, Randy S
author_facet Maldarelli, Grace A
Metz, Maeva
Funez-dePagnier, Gabriela
Lavergne, Alexa
Lai, Daniel
Chang, Adrienne
Malik, Fardina
de Vlaminck, Iwijn
Longman, Randy S
author_sort Maldarelli, Grace A
collection PubMed
description BACKGROUND: Bacterial constituents of the intestinal microbiota can contribute to local and systemic inflammatory diseases. Crohn's disease (CD), a type of inflammatory bowel disease, can result in extraintestinal manifestations (EIM) including peripheral (CD-SpA) and axial spondyloarthritis (CD-AxSpA). Microbial contributors to CD pathogenesis can be identified by flow cytometric sorting and 16S sequencing of bacteria recognized by mucosal IgA. We expand this technique by incubating fecal samples with autologous sera, capturing bacterial species recognized by circulating IgG in a process called IgG-seq. We hypothesize that these systemically-recognized enteric bacteria are linked to development of CD-EIM. METHODS: Fecal samples from individuals with CD were sorted into IgG-positive and negative populations. DNA was extracted from each population, 16S sequencing performed, and sequences processed with QIIME2. Intestinal coating index (ICI) was calculated at the genus level. Serum cell-free DNA sequencing (cfDNA) was performed for a subset of samples. RESULTS: IgG-seq was conducted on 86 CD, 41 CD-SpA, and 16 CD-AxSpA samples. PCoA analysis demonstrates significant differences in microbiome composition in the three groups (P = 0.013, PERMANOVA). Relative abundances of Escherichia-Shigella and Ruminococcus are positively correlated with joint disease activity. Analysis of IgG ICI for genera present in > 10% of patients demonstrates overrepresentation of Ruminococcus, Escherichia-Shigella, and Bacteroides in IgG-recognized fractions. IgG recognition of bacteria does not cluster specifically by CD or EIM severity. cfDNA sequencing demonstrates no Ruminococcus DNA in serum, whereas E. coli DNA was detected in multiple patient sera. CONCLUSION: IgG-seq is a robust method for identifying immune-reactive enteric bacteria; our results highlight the link between immune response to enteric bacterial genera, such as Escherichia-Shigella and Ruminococcus, and joint disease activity in CD-SpA and CD-AxSpA. While Escherichia-Shigella may induce immunity by breaching the mucosal barrier, the absence of Ruminococcus in serum cfDNA suggests immune activation at barrier sites. Further studies are needed to characterize the strain-specific features that underlie our findings. DISCLOSURES: Fardina Malik, MD, Pfizer: Advisor/Consultant Iwijn de Vlaminck, PhD, GenDX: Advisor/Consultant|GenDX: Board Member|Kanvas Biosciences: Board Member|Kanvas Biosciences: Ownership Interest|Karius Inc.: Board Member|Karius Inc.: Ownership Interest|Viracor Eurofins: Advisor/Consultant Randy S. Longman, MD, PhD, Pfizer: Advisor/Consultant.
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spelling pubmed-97521342022-12-16 494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations Maldarelli, Grace A Metz, Maeva Funez-dePagnier, Gabriela Lavergne, Alexa Lai, Daniel Chang, Adrienne Malik, Fardina de Vlaminck, Iwijn Longman, Randy S Open Forum Infect Dis Abstracts BACKGROUND: Bacterial constituents of the intestinal microbiota can contribute to local and systemic inflammatory diseases. Crohn's disease (CD), a type of inflammatory bowel disease, can result in extraintestinal manifestations (EIM) including peripheral (CD-SpA) and axial spondyloarthritis (CD-AxSpA). Microbial contributors to CD pathogenesis can be identified by flow cytometric sorting and 16S sequencing of bacteria recognized by mucosal IgA. We expand this technique by incubating fecal samples with autologous sera, capturing bacterial species recognized by circulating IgG in a process called IgG-seq. We hypothesize that these systemically-recognized enteric bacteria are linked to development of CD-EIM. METHODS: Fecal samples from individuals with CD were sorted into IgG-positive and negative populations. DNA was extracted from each population, 16S sequencing performed, and sequences processed with QIIME2. Intestinal coating index (ICI) was calculated at the genus level. Serum cell-free DNA sequencing (cfDNA) was performed for a subset of samples. RESULTS: IgG-seq was conducted on 86 CD, 41 CD-SpA, and 16 CD-AxSpA samples. PCoA analysis demonstrates significant differences in microbiome composition in the three groups (P = 0.013, PERMANOVA). Relative abundances of Escherichia-Shigella and Ruminococcus are positively correlated with joint disease activity. Analysis of IgG ICI for genera present in > 10% of patients demonstrates overrepresentation of Ruminococcus, Escherichia-Shigella, and Bacteroides in IgG-recognized fractions. IgG recognition of bacteria does not cluster specifically by CD or EIM severity. cfDNA sequencing demonstrates no Ruminococcus DNA in serum, whereas E. coli DNA was detected in multiple patient sera. CONCLUSION: IgG-seq is a robust method for identifying immune-reactive enteric bacteria; our results highlight the link between immune response to enteric bacterial genera, such as Escherichia-Shigella and Ruminococcus, and joint disease activity in CD-SpA and CD-AxSpA. While Escherichia-Shigella may induce immunity by breaching the mucosal barrier, the absence of Ruminococcus in serum cfDNA suggests immune activation at barrier sites. Further studies are needed to characterize the strain-specific features that underlie our findings. DISCLOSURES: Fardina Malik, MD, Pfizer: Advisor/Consultant Iwijn de Vlaminck, PhD, GenDX: Advisor/Consultant|GenDX: Board Member|Kanvas Biosciences: Board Member|Kanvas Biosciences: Ownership Interest|Karius Inc.: Board Member|Karius Inc.: Ownership Interest|Viracor Eurofins: Advisor/Consultant Randy S. Longman, MD, PhD, Pfizer: Advisor/Consultant. Oxford University Press 2022-12-15 /pmc/articles/PMC9752134/ http://dx.doi.org/10.1093/ofid/ofac492.552 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstracts
Maldarelli, Grace A
Metz, Maeva
Funez-dePagnier, Gabriela
Lavergne, Alexa
Lai, Daniel
Chang, Adrienne
Malik, Fardina
de Vlaminck, Iwijn
Longman, Randy S
494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations
title 494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations
title_full 494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations
title_fullStr 494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations
title_full_unstemmed 494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations
title_short 494. Enteric bacteria are immune-reactive in patients with Crohn's disease with extraintestinal manifestations
title_sort 494. enteric bacteria are immune-reactive in patients with crohn's disease with extraintestinal manifestations
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9752134/
http://dx.doi.org/10.1093/ofid/ofac492.552
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