Cargando…

131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains

BACKGROUND: Carbapenem-resistant Acinetobacter baumannii (CRAb) is a WHO priority 1 critical pathogen. Despite Israel being affected early by high CRAb rates, limited molecular data are available. We investigated the presence of carbapenemases among 198 Acinetobacter spp. clinical isolates from Isra...

Descripción completa

Detalles Bibliográficos
Autores principales: Haraoui, Louis-Patrick, Grenier, Frédéric, Heynemand, Félix, Lévesque, Simon, Sullivan, Richard, Landecker, Hannah L, Higgins, Paul G, Rodrigue, Sébastien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9752397/
http://dx.doi.org/10.1093/ofid/ofac492.209
_version_ 1784850712350425088
author Haraoui, Louis-Patrick
Grenier, Frédéric
Heynemand, Félix
Lévesque, Simon
Sullivan, Richard
Landecker, Hannah L
Higgins, Paul G
Rodrigue, Sébastien
author_facet Haraoui, Louis-Patrick
Grenier, Frédéric
Heynemand, Félix
Lévesque, Simon
Sullivan, Richard
Landecker, Hannah L
Higgins, Paul G
Rodrigue, Sébastien
author_sort Haraoui, Louis-Patrick
collection PubMed
description BACKGROUND: Carbapenem-resistant Acinetobacter baumannii (CRAb) is a WHO priority 1 critical pathogen. Despite Israel being affected early by high CRAb rates, limited molecular data are available. We investigated the presence of carbapenemases among 198 Acinetobacter spp. clinical isolates from Israel between 2001 and 2006. METHODS: Strains from 3 archives underwent whole-genome sequencing (Illumina NovaSeq on all, MinION on a subset) and computational analyses: assembly (Unicycler), annotation (prokka), identification (Kraken, 16S rRNA), search for carbapenemases (ResFinder, BLDB curation). Figures were generated in Inkscape, plasmid alignment on AliTV. RESULTS: A. baumannii (Ab) represented 179/198 (90.4%) Acinetobacter spp. (Figure 1). Annual incidence varied from a minimum of 16 (2001) to a maximum of 62 (2004), with an average of 30. Eighty-four Ab (46.9%) carried a carbapenemase: 38 (45.2%) bla(OXA-72) (bla(OXA-24-like)); 28 (33.3%) bla(OXA-23-like) (20 bla(OXA-23) and 8 bla(OXA-225)); 18 (21.5%) bla(OXA-58) (16 from 2001-2). Annual CRAb rate increased yearly from 2002 (32%) to 2006 (67%). Eight species of non-baumannii Acinetobacter (NbA) accounted for 19 isolates (9.6%): A. pittii (n=6), lwoffii (n=4), junii (n=3), ursingii (n=2), others n=1: A. gyllenbergii, johnsonnii, schindleri, and variabilis (Figure 1). Two of three A. junii contained bla(OXA-58), one of which, Ajun-H1-3, isolated in a blood culture in January 2004, also possessed bla(NDM-1). The pNDM-Ajun-H1-3 plasmid matched numerous NDM-positive plasmids reported from 2005 onwards in Acinetobacter spp. as well as Enterobacterales (Figure 2). [Figure: see text] [Figure: see text] CONCLUSION: We retrospectively assessed carbapenemase diversity among Acinetobacter spp. in Israel from 2001-2006. Analysis of 179 Ab isolates predate observations elsewhere: rapidly rising CRAb rates, driven by the dissemination of bla(OXA-23-like) and bla(OXA-24-like) genes replacing bla(OXA-58). Among 19 NbA, an A. junii isolated in 2004 carried two carbapenemases, bla(OXA-58) and bla(NDM-1), making it the earliest NDM-positive isolate reported to date, preceding NDM-positive Acinetobacter spp. found in 2005 in India. Further investigations into the origins of bla(NDM) are needed to understand the conditions that led to its emergence and prevent similar issues from arising in the future. DISCLOSURES: Paul G. Higgins, PhD, Coris Bioconcept: Supply antibodies for lateral flow test kits.
format Online
Article
Text
id pubmed-9752397
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-97523972022-12-16 131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains Haraoui, Louis-Patrick Grenier, Frédéric Heynemand, Félix Lévesque, Simon Sullivan, Richard Landecker, Hannah L Higgins, Paul G Rodrigue, Sébastien Open Forum Infect Dis Abstracts BACKGROUND: Carbapenem-resistant Acinetobacter baumannii (CRAb) is a WHO priority 1 critical pathogen. Despite Israel being affected early by high CRAb rates, limited molecular data are available. We investigated the presence of carbapenemases among 198 Acinetobacter spp. clinical isolates from Israel between 2001 and 2006. METHODS: Strains from 3 archives underwent whole-genome sequencing (Illumina NovaSeq on all, MinION on a subset) and computational analyses: assembly (Unicycler), annotation (prokka), identification (Kraken, 16S rRNA), search for carbapenemases (ResFinder, BLDB curation). Figures were generated in Inkscape, plasmid alignment on AliTV. RESULTS: A. baumannii (Ab) represented 179/198 (90.4%) Acinetobacter spp. (Figure 1). Annual incidence varied from a minimum of 16 (2001) to a maximum of 62 (2004), with an average of 30. Eighty-four Ab (46.9%) carried a carbapenemase: 38 (45.2%) bla(OXA-72) (bla(OXA-24-like)); 28 (33.3%) bla(OXA-23-like) (20 bla(OXA-23) and 8 bla(OXA-225)); 18 (21.5%) bla(OXA-58) (16 from 2001-2). Annual CRAb rate increased yearly from 2002 (32%) to 2006 (67%). Eight species of non-baumannii Acinetobacter (NbA) accounted for 19 isolates (9.6%): A. pittii (n=6), lwoffii (n=4), junii (n=3), ursingii (n=2), others n=1: A. gyllenbergii, johnsonnii, schindleri, and variabilis (Figure 1). Two of three A. junii contained bla(OXA-58), one of which, Ajun-H1-3, isolated in a blood culture in January 2004, also possessed bla(NDM-1). The pNDM-Ajun-H1-3 plasmid matched numerous NDM-positive plasmids reported from 2005 onwards in Acinetobacter spp. as well as Enterobacterales (Figure 2). [Figure: see text] [Figure: see text] CONCLUSION: We retrospectively assessed carbapenemase diversity among Acinetobacter spp. in Israel from 2001-2006. Analysis of 179 Ab isolates predate observations elsewhere: rapidly rising CRAb rates, driven by the dissemination of bla(OXA-23-like) and bla(OXA-24-like) genes replacing bla(OXA-58). Among 19 NbA, an A. junii isolated in 2004 carried two carbapenemases, bla(OXA-58) and bla(NDM-1), making it the earliest NDM-positive isolate reported to date, preceding NDM-positive Acinetobacter spp. found in 2005 in India. Further investigations into the origins of bla(NDM) are needed to understand the conditions that led to its emergence and prevent similar issues from arising in the future. DISCLOSURES: Paul G. Higgins, PhD, Coris Bioconcept: Supply antibodies for lateral flow test kits. Oxford University Press 2022-12-15 /pmc/articles/PMC9752397/ http://dx.doi.org/10.1093/ofid/ofac492.209 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Abstracts
Haraoui, Louis-Patrick
Grenier, Frédéric
Heynemand, Félix
Lévesque, Simon
Sullivan, Richard
Landecker, Hannah L
Higgins, Paul G
Rodrigue, Sébastien
131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains
title 131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains
title_full 131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains
title_fullStr 131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains
title_full_unstemmed 131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains
title_short 131. Carbapenemase-producing Acinetobacter spp. from Israel, 2001-2006: earliest report of bla(NDM) predating the oldest known bla(NDM)-positive strains
title_sort 131. carbapenemase-producing acinetobacter spp. from israel, 2001-2006: earliest report of bla(ndm) predating the oldest known bla(ndm)-positive strains
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9752397/
http://dx.doi.org/10.1093/ofid/ofac492.209
work_keys_str_mv AT haraouilouispatrick 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT grenierfrederic 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT heynemandfelix 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT levesquesimon 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT sullivanrichard 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT landeckerhannahl 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT higginspaulg 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains
AT rodriguesebastien 131carbapenemaseproducingacinetobactersppfromisrael20012006earliestreportofblandmpredatingtheoldestknownblandmpositivestrains