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Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients

T‐cell receptor repertoire (TCRR) sequencing has been widely applied in many fields as a novel tool. This study explored characteristics of TCRR in detail with a cohort of 598 rheumatoid arthritis (RA) patients before and after anti‐rheumatic treatments. We highlighted the abnormal TCRR distribution...

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Autores principales: Yang, Peiqing, He, Yijing, Qing, Pingying, Xu, Wangdong, Xie, Dan, Cazier, Jean‐Baptiste, Liu, Xiao, Varnai, Csilla, Zhou, Yi, Zhao, Yi, Tang, Huairong, Yin, Xiaoming, Liu, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9753462/
https://www.ncbi.nlm.nih.gov/pubmed/36440548
http://dx.doi.org/10.1111/jcmm.17623
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author Yang, Peiqing
He, Yijing
Qing, Pingying
Xu, Wangdong
Xie, Dan
Cazier, Jean‐Baptiste
Liu, Xiao
Varnai, Csilla
Zhou, Yi
Zhao, Yi
Tang, Huairong
Yin, Xiaoming
Liu, Yi
author_facet Yang, Peiqing
He, Yijing
Qing, Pingying
Xu, Wangdong
Xie, Dan
Cazier, Jean‐Baptiste
Liu, Xiao
Varnai, Csilla
Zhou, Yi
Zhao, Yi
Tang, Huairong
Yin, Xiaoming
Liu, Yi
author_sort Yang, Peiqing
collection PubMed
description T‐cell receptor repertoire (TCRR) sequencing has been widely applied in many fields as a novel tool. This study explored characteristics of TCRR in detail with a cohort of 598 rheumatoid arthritis (RA) patients before and after anti‐rheumatic treatments. We highlighted the abnormal TCRR distribution in RA characterized by decreased diversity and increased proportion of hyperexpanded clones (HECs), which was potentially attributed to skewed usage of global V/J segments but not a few certain ones. Enriched motifs analysis in RA community demonstrated the huge heterogeneity of CDR3 sequences, so that individual factors are strongly recommended to be taken into consideration when it comes to clinical application of TCRR. Disease‐modifying antirheumatic drugs (DMARDs) can regulate immune system through recovery of TCRR richness to relieve symptoms. Remarkably, sensitive gene profile and advantageous gene profile were identified in this study as new biomarkers for different DMARDs regimens.
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spelling pubmed-97534622022-12-19 Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients Yang, Peiqing He, Yijing Qing, Pingying Xu, Wangdong Xie, Dan Cazier, Jean‐Baptiste Liu, Xiao Varnai, Csilla Zhou, Yi Zhao, Yi Tang, Huairong Yin, Xiaoming Liu, Yi J Cell Mol Med Original Articles T‐cell receptor repertoire (TCRR) sequencing has been widely applied in many fields as a novel tool. This study explored characteristics of TCRR in detail with a cohort of 598 rheumatoid arthritis (RA) patients before and after anti‐rheumatic treatments. We highlighted the abnormal TCRR distribution in RA characterized by decreased diversity and increased proportion of hyperexpanded clones (HECs), which was potentially attributed to skewed usage of global V/J segments but not a few certain ones. Enriched motifs analysis in RA community demonstrated the huge heterogeneity of CDR3 sequences, so that individual factors are strongly recommended to be taken into consideration when it comes to clinical application of TCRR. Disease‐modifying antirheumatic drugs (DMARDs) can regulate immune system through recovery of TCRR richness to relieve symptoms. Remarkably, sensitive gene profile and advantageous gene profile were identified in this study as new biomarkers for different DMARDs regimens. John Wiley and Sons Inc. 2022-11-28 2022-12 /pmc/articles/PMC9753462/ /pubmed/36440548 http://dx.doi.org/10.1111/jcmm.17623 Text en © 2022 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Yang, Peiqing
He, Yijing
Qing, Pingying
Xu, Wangdong
Xie, Dan
Cazier, Jean‐Baptiste
Liu, Xiao
Varnai, Csilla
Zhou, Yi
Zhao, Yi
Tang, Huairong
Yin, Xiaoming
Liu, Yi
Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients
title Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients
title_full Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients
title_fullStr Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients
title_full_unstemmed Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients
title_short Application of T‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: A cohort‐study based on RA patients
title_sort application of t‐cell receptor repertoire as a novel monitor in dynamic tracking and assessment: a cohort‐study based on ra patients
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9753462/
https://www.ncbi.nlm.nih.gov/pubmed/36440548
http://dx.doi.org/10.1111/jcmm.17623
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