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Sparse inference and active learning of stochastic differential equations from data
Automatic machine learning of empirical models from experimental data has recently become possible as a result of increased availability of computational power and dedicated algorithms. Despite the successes of non-parametric inference and neural-network-based inference for empirical modelling, a ph...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9755218/ https://www.ncbi.nlm.nih.gov/pubmed/36522347 http://dx.doi.org/10.1038/s41598-022-25638-9 |
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author | Huang, Yunfei Mabrouk, Youssef Gompper, Gerhard Sabass, Benedikt |
author_facet | Huang, Yunfei Mabrouk, Youssef Gompper, Gerhard Sabass, Benedikt |
author_sort | Huang, Yunfei |
collection | PubMed |
description | Automatic machine learning of empirical models from experimental data has recently become possible as a result of increased availability of computational power and dedicated algorithms. Despite the successes of non-parametric inference and neural-network-based inference for empirical modelling, a physical interpretation of the results often remains challenging. Here, we focus on direct inference of governing differential equations from data, which can be formulated as a linear inverse problem. A Bayesian framework with a Laplacian prior distribution is employed for finding sparse solutions efficiently. The superior accuracy and robustness of the method is demonstrated for various cases, including ordinary, partial, and stochastic differential equations. Furthermore, we develop an active learning procedure for the automated discovery of stochastic differential equations. In this procedure, learning of the unknown dynamical equations is coupled to the application of perturbations to the measured system in a feedback loop. We show that active learning can significantly improve the inference of global models for systems with multiple energetic minima. |
format | Online Article Text |
id | pubmed-9755218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97552182022-12-17 Sparse inference and active learning of stochastic differential equations from data Huang, Yunfei Mabrouk, Youssef Gompper, Gerhard Sabass, Benedikt Sci Rep Article Automatic machine learning of empirical models from experimental data has recently become possible as a result of increased availability of computational power and dedicated algorithms. Despite the successes of non-parametric inference and neural-network-based inference for empirical modelling, a physical interpretation of the results often remains challenging. Here, we focus on direct inference of governing differential equations from data, which can be formulated as a linear inverse problem. A Bayesian framework with a Laplacian prior distribution is employed for finding sparse solutions efficiently. The superior accuracy and robustness of the method is demonstrated for various cases, including ordinary, partial, and stochastic differential equations. Furthermore, we develop an active learning procedure for the automated discovery of stochastic differential equations. In this procedure, learning of the unknown dynamical equations is coupled to the application of perturbations to the measured system in a feedback loop. We show that active learning can significantly improve the inference of global models for systems with multiple energetic minima. Nature Publishing Group UK 2022-12-15 /pmc/articles/PMC9755218/ /pubmed/36522347 http://dx.doi.org/10.1038/s41598-022-25638-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Huang, Yunfei Mabrouk, Youssef Gompper, Gerhard Sabass, Benedikt Sparse inference and active learning of stochastic differential equations from data |
title | Sparse inference and active learning of stochastic differential equations from data |
title_full | Sparse inference and active learning of stochastic differential equations from data |
title_fullStr | Sparse inference and active learning of stochastic differential equations from data |
title_full_unstemmed | Sparse inference and active learning of stochastic differential equations from data |
title_short | Sparse inference and active learning of stochastic differential equations from data |
title_sort | sparse inference and active learning of stochastic differential equations from data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9755218/ https://www.ncbi.nlm.nih.gov/pubmed/36522347 http://dx.doi.org/10.1038/s41598-022-25638-9 |
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