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In silico and in vitro approaches allow the identification of the Prosystemin molecular network

Tomato Prosystemin (ProSys), the precursor of Systemin, a small peptidic hormone, is produced at very low concentration in unchallenged plants, while its expression greatly increases in response to several different stressors triggering an array of defence responses. The molecular mechanisms that un...

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Autores principales: Natale, Roberto, Coppola, Mariangela, D'Agostino, Nunzio, Zhang, Youjun, Fernie, Alisdair Robert, Castaldi, Valeria, Rao, Rosa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9755248/
https://www.ncbi.nlm.nih.gov/pubmed/36544481
http://dx.doi.org/10.1016/j.csbj.2022.12.006
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author Natale, Roberto
Coppola, Mariangela
D'Agostino, Nunzio
Zhang, Youjun
Fernie, Alisdair Robert
Castaldi, Valeria
Rao, Rosa
author_facet Natale, Roberto
Coppola, Mariangela
D'Agostino, Nunzio
Zhang, Youjun
Fernie, Alisdair Robert
Castaldi, Valeria
Rao, Rosa
author_sort Natale, Roberto
collection PubMed
description Tomato Prosystemin (ProSys), the precursor of Systemin, a small peptidic hormone, is produced at very low concentration in unchallenged plants, while its expression greatly increases in response to several different stressors triggering an array of defence responses. The molecular mechanisms that underpin such a wide array of defence barriers are not fully understood and are likely correlated with the intrinsically disordered (ID) structure of the protein. ID proteins interact with different protein partners forming complexes involved in the modulation of different biological mechanisms. Here we describe the ProSys-protein network that shed light on the molecular mechanisms underpinning ProSys associated defence responses. Three different approaches were used. In silico prediction resulted in 98 direct interactors, most clustering in phytohormone biosynthesis, transcription factors and signal transduction gene classes. The network shows the central role of ProSys during defence responses, that reflects its role as central hub. In vitro ProSys interactors, identified by Affinity Purification-Mass Spectrometry (AP-MS), revealed over three hundred protein partners, while Bimolecular Fluorescent Complementation (BiFC) experiments validated in vivo some interactors predicted in silico and in vitro. Our results demonstrate that ProSys interacts with several proteins and reveal new key molecular events in the ProSys-dependent defence response of tomato plant.
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spelling pubmed-97552482022-12-20 In silico and in vitro approaches allow the identification of the Prosystemin molecular network Natale, Roberto Coppola, Mariangela D'Agostino, Nunzio Zhang, Youjun Fernie, Alisdair Robert Castaldi, Valeria Rao, Rosa Comput Struct Biotechnol J Research Article Tomato Prosystemin (ProSys), the precursor of Systemin, a small peptidic hormone, is produced at very low concentration in unchallenged plants, while its expression greatly increases in response to several different stressors triggering an array of defence responses. The molecular mechanisms that underpin such a wide array of defence barriers are not fully understood and are likely correlated with the intrinsically disordered (ID) structure of the protein. ID proteins interact with different protein partners forming complexes involved in the modulation of different biological mechanisms. Here we describe the ProSys-protein network that shed light on the molecular mechanisms underpinning ProSys associated defence responses. Three different approaches were used. In silico prediction resulted in 98 direct interactors, most clustering in phytohormone biosynthesis, transcription factors and signal transduction gene classes. The network shows the central role of ProSys during defence responses, that reflects its role as central hub. In vitro ProSys interactors, identified by Affinity Purification-Mass Spectrometry (AP-MS), revealed over three hundred protein partners, while Bimolecular Fluorescent Complementation (BiFC) experiments validated in vivo some interactors predicted in silico and in vitro. Our results demonstrate that ProSys interacts with several proteins and reveal new key molecular events in the ProSys-dependent defence response of tomato plant. Research Network of Computational and Structural Biotechnology 2022-12-07 /pmc/articles/PMC9755248/ /pubmed/36544481 http://dx.doi.org/10.1016/j.csbj.2022.12.006 Text en © 2022 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Natale, Roberto
Coppola, Mariangela
D'Agostino, Nunzio
Zhang, Youjun
Fernie, Alisdair Robert
Castaldi, Valeria
Rao, Rosa
In silico and in vitro approaches allow the identification of the Prosystemin molecular network
title In silico and in vitro approaches allow the identification of the Prosystemin molecular network
title_full In silico and in vitro approaches allow the identification of the Prosystemin molecular network
title_fullStr In silico and in vitro approaches allow the identification of the Prosystemin molecular network
title_full_unstemmed In silico and in vitro approaches allow the identification of the Prosystemin molecular network
title_short In silico and in vitro approaches allow the identification of the Prosystemin molecular network
title_sort in silico and in vitro approaches allow the identification of the prosystemin molecular network
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9755248/
https://www.ncbi.nlm.nih.gov/pubmed/36544481
http://dx.doi.org/10.1016/j.csbj.2022.12.006
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