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Implementing re-configurable biological computation with distributed multicellular consortia

The use of synthetic biological circuits to deal with numerous biological challenges has been proposed in several studies, but its implementation is still remote. A major problem encountered is the complexity of the cellular engineering needed to achieve complex biological circuits and the lack of g...

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Autores principales: Canadell, David, Ortiz-Vaquerizas, Nicolás, Mogas-Diez, Sira, de Nadal, Eulàlia, Macia, Javier, Posas, Francesc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9757037/
https://www.ncbi.nlm.nih.gov/pubmed/36454021
http://dx.doi.org/10.1093/nar/gkac1120
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author Canadell, David
Ortiz-Vaquerizas, Nicolás
Mogas-Diez, Sira
de Nadal, Eulàlia
Macia, Javier
Posas, Francesc
author_facet Canadell, David
Ortiz-Vaquerizas, Nicolás
Mogas-Diez, Sira
de Nadal, Eulàlia
Macia, Javier
Posas, Francesc
author_sort Canadell, David
collection PubMed
description The use of synthetic biological circuits to deal with numerous biological challenges has been proposed in several studies, but its implementation is still remote. A major problem encountered is the complexity of the cellular engineering needed to achieve complex biological circuits and the lack of general-purpose biological systems. The generation of re-programmable circuits can increase circuit flexibility and the scalability of complex cell-based computing devices. Here we present a new architecture to produce reprogrammable biological circuits that allow the development of a variety of different functions with minimal cell engineering. We demonstrate the feasibility of creating several circuits using only a small set of engineered cells, which can be externally reprogrammed to implement simple logics in response to specific inputs. In this regard, depending on the computation needs, a device composed of a number of defined cells can generate a variety of circuits without the need of further cell engineering or rearrangements. In addition, the inclusion of a memory module in the circuits strongly improved the digital response of the devices. The reprogrammability of biological circuits is an intrinsic capacity that is not provided in electronics and it may be used as a tool to solve complex biological problems.
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spelling pubmed-97570372022-12-19 Implementing re-configurable biological computation with distributed multicellular consortia Canadell, David Ortiz-Vaquerizas, Nicolás Mogas-Diez, Sira de Nadal, Eulàlia Macia, Javier Posas, Francesc Nucleic Acids Res Synthetic Biology and Bioengineering The use of synthetic biological circuits to deal with numerous biological challenges has been proposed in several studies, but its implementation is still remote. A major problem encountered is the complexity of the cellular engineering needed to achieve complex biological circuits and the lack of general-purpose biological systems. The generation of re-programmable circuits can increase circuit flexibility and the scalability of complex cell-based computing devices. Here we present a new architecture to produce reprogrammable biological circuits that allow the development of a variety of different functions with minimal cell engineering. We demonstrate the feasibility of creating several circuits using only a small set of engineered cells, which can be externally reprogrammed to implement simple logics in response to specific inputs. In this regard, depending on the computation needs, a device composed of a number of defined cells can generate a variety of circuits without the need of further cell engineering or rearrangements. In addition, the inclusion of a memory module in the circuits strongly improved the digital response of the devices. The reprogrammability of biological circuits is an intrinsic capacity that is not provided in electronics and it may be used as a tool to solve complex biological problems. Oxford University Press 2022-12-01 /pmc/articles/PMC9757037/ /pubmed/36454021 http://dx.doi.org/10.1093/nar/gkac1120 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Synthetic Biology and Bioengineering
Canadell, David
Ortiz-Vaquerizas, Nicolás
Mogas-Diez, Sira
de Nadal, Eulàlia
Macia, Javier
Posas, Francesc
Implementing re-configurable biological computation with distributed multicellular consortia
title Implementing re-configurable biological computation with distributed multicellular consortia
title_full Implementing re-configurable biological computation with distributed multicellular consortia
title_fullStr Implementing re-configurable biological computation with distributed multicellular consortia
title_full_unstemmed Implementing re-configurable biological computation with distributed multicellular consortia
title_short Implementing re-configurable biological computation with distributed multicellular consortia
title_sort implementing re-configurable biological computation with distributed multicellular consortia
topic Synthetic Biology and Bioengineering
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9757037/
https://www.ncbi.nlm.nih.gov/pubmed/36454021
http://dx.doi.org/10.1093/nar/gkac1120
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