Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan

The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and <10% contamination, from cattle in Japan. The majority of M...

Descripción completa

Detalles Bibliográficos
Autores principales: Sato, Yoshiaki, Takebe, Hiroaki, Oishi, Kazato, Yasuda, Jumpei, Kumagai, Hajime, Hirooka, Hiroyuki, Yoshida, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2022
Materias:
Short Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9763041/
https://www.ncbi.nlm.nih.gov/pubmed/36273894
http://dx.doi.org/10.1264/jsme2.ME22039
_version_ 1784852970917068800
author Sato, Yoshiaki
Takebe, Hiroaki
Oishi, Kazato
Yasuda, Jumpei
Kumagai, Hajime
Hirooka, Hiroyuki
Yoshida, Takashi
author_facet Sato, Yoshiaki
Takebe, Hiroaki
Oishi, Kazato
Yasuda, Jumpei
Kumagai, Hajime
Hirooka, Hiroyuki
Yoshida, Takashi
author_sort Sato, Yoshiaki
collection PubMed
description The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and <10% contamination, from cattle in Japan. The majority of MAGs were potentially novel strains, encoding various enzymes related to plant biomass degradation and volatile fatty acid production. The MAGs identified in the present study may be valuable resources to enhance the resolution of future taxonomical and functional studies based on metagenomes and metatranscriptomes.
format Online
Article
Text
id pubmed-9763041
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles
record_format MEDLINE/PubMed
spelling pubmed-97630412023-01-03 Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan Sato, Yoshiaki Takebe, Hiroaki Oishi, Kazato Yasuda, Jumpei Kumagai, Hajime Hirooka, Hiroyuki Yoshida, Takashi Microbes Environ Short Communication The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and <10% contamination, from cattle in Japan. The majority of MAGs were potentially novel strains, encoding various enzymes related to plant biomass degradation and volatile fatty acid production. The MAGs identified in the present study may be valuable resources to enhance the resolution of future taxonomical and functional studies based on metagenomes and metatranscriptomes. Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2022 2022-10-21 /pmc/articles/PMC9763041/ /pubmed/36273894 http://dx.doi.org/10.1264/jsme2.ME22039 Text en 2022 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Sato, Yoshiaki
Takebe, Hiroaki
Oishi, Kazato
Yasuda, Jumpei
Kumagai, Hajime
Hirooka, Hiroyuki
Yoshida, Takashi
Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
title Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
title_full Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
title_fullStr Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
title_full_unstemmed Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
title_short Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
title_sort identification of 146 metagenome-assembled genomes from the rumen microbiome of cattle in japan
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9763041/
https://www.ncbi.nlm.nih.gov/pubmed/36273894
http://dx.doi.org/10.1264/jsme2.ME22039
work_keys_str_mv AT satoyoshiaki identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan
AT takebehiroaki identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan
AT oishikazato identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan
AT yasudajumpei identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan
AT kumagaihajime identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan
AT hirookahiroyuki identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan
AT yoshidatakashi identificationof146metagenomeassembledgenomesfromtherumenmicrobiomeofcattleinjapan

Ejemplares similares