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Rapid global spread of variants of concern of SARS-CoV-2

OBJECTIVES: Variants of concern (VOCs) of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), such as the Delta variant and the Omicron variant, have reached all countries/regions of the world and have had a tremendous impact. This study analyses the global spread of VOCs of SARS-CoV-2. ME...

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Detalles Bibliográficos
Autores principales: He, Daihai, Cowling, Benjamin J., Ali, Sheikh Taslim, Stone, Lewi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9763203/
https://www.ncbi.nlm.nih.gov/pubmed/36569559
http://dx.doi.org/10.1016/j.ijregi.2022.12.005
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author He, Daihai
Cowling, Benjamin J.
Ali, Sheikh Taslim
Stone, Lewi
author_facet He, Daihai
Cowling, Benjamin J.
Ali, Sheikh Taslim
Stone, Lewi
author_sort He, Daihai
collection PubMed
description OBJECTIVES: Variants of concern (VOCs) of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), such as the Delta variant and the Omicron variant, have reached all countries/regions of the world and have had a tremendous impact. This study analyses the global spread of VOCs of SARS-CoV-2. METHODS: Biweekly aggregated numbers of several VOCs were retrieved for 58 locations. The time interval for the proportion of VOC samples to exceed 60% (indicating dominance) among all samples sequenced in each location was calculated. The times taken for a VOC to become dominant in 12 (or 36) locations was defined in order to quantify the speed of spread. RESULTS: It took 63, 56 and 28 days for the Alpha, Delta and Omicron variants to become dominant in 12 locations, respectively, and 133, 70 and 28 days for the Alpha, Delta and Omicron variants to become dominant in 36 locations. CONCLUSIONS: The Omicron variant has much higher transmission potential compared with the Delta variant, and the Delta variant has higher transmission potential compared with the pre-Delta VOCs.
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spelling pubmed-97632032022-12-20 Rapid global spread of variants of concern of SARS-CoV-2 He, Daihai Cowling, Benjamin J. Ali, Sheikh Taslim Stone, Lewi IJID Reg Short Communication OBJECTIVES: Variants of concern (VOCs) of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), such as the Delta variant and the Omicron variant, have reached all countries/regions of the world and have had a tremendous impact. This study analyses the global spread of VOCs of SARS-CoV-2. METHODS: Biweekly aggregated numbers of several VOCs were retrieved for 58 locations. The time interval for the proportion of VOC samples to exceed 60% (indicating dominance) among all samples sequenced in each location was calculated. The times taken for a VOC to become dominant in 12 (or 36) locations was defined in order to quantify the speed of spread. RESULTS: It took 63, 56 and 28 days for the Alpha, Delta and Omicron variants to become dominant in 12 locations, respectively, and 133, 70 and 28 days for the Alpha, Delta and Omicron variants to become dominant in 36 locations. CONCLUSIONS: The Omicron variant has much higher transmission potential compared with the Delta variant, and the Delta variant has higher transmission potential compared with the pre-Delta VOCs. Elsevier 2022-12-20 /pmc/articles/PMC9763203/ /pubmed/36569559 http://dx.doi.org/10.1016/j.ijregi.2022.12.005 Text en © 2022 The Author(s)
spellingShingle Short Communication
He, Daihai
Cowling, Benjamin J.
Ali, Sheikh Taslim
Stone, Lewi
Rapid global spread of variants of concern of SARS-CoV-2
title Rapid global spread of variants of concern of SARS-CoV-2
title_full Rapid global spread of variants of concern of SARS-CoV-2
title_fullStr Rapid global spread of variants of concern of SARS-CoV-2
title_full_unstemmed Rapid global spread of variants of concern of SARS-CoV-2
title_short Rapid global spread of variants of concern of SARS-CoV-2
title_sort rapid global spread of variants of concern of sars-cov-2
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9763203/
https://www.ncbi.nlm.nih.gov/pubmed/36569559
http://dx.doi.org/10.1016/j.ijregi.2022.12.005
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