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Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus
To screen for common target genes in intracranial aneurysms (IA) and type 2 diabetes mellitus (T2DM), construct a common transcriptional regulatory network to predict clusters of candidate genes involved in the pathogenesis of T2DM and IA, and identify the common neurovascular markers and pathways i...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9763588/ https://www.ncbi.nlm.nih.gov/pubmed/36561297 http://dx.doi.org/10.3389/fneur.2022.1032038 |
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author | Tian, Tian Sun, Wenhao Du, Jia Sun, Yafei |
author_facet | Tian, Tian Sun, Wenhao Du, Jia Sun, Yafei |
author_sort | Tian, Tian |
collection | PubMed |
description | To screen for common target genes in intracranial aneurysms (IA) and type 2 diabetes mellitus (T2DM), construct a common transcriptional regulatory network to predict clusters of candidate genes involved in the pathogenesis of T2DM and IA, and identify the common neurovascular markers and pathways in T2DM causing IA. Microarray datasets (GSE55650, GSE25462, GSE26969, GSE75436, and GSE13353) from the GEO database were analyzed in this research. Screening of the IA and the T2DM datasets yielded a total of 126 DEGs, among which 78 were upregulated and 138 were downregulated. Functional enrichment analysis revealed that these DEGs were enriched for a total of 68 GO pathways, including extracellular matrix composition, coagulation regulation, hemostasis regulation, and collagen fiber composition pathways. We also constructed transcriptional regulatory networks, and identified key transcription factors involved in both the conditions. Univariate logistic regression analysis showed that ARNTL2 and STAT1 were significantly associated with the development of T2DM and IA, acting as the common neurovascular markers for both the diseases. In cellular experiments, hyperglycemic microenvironments exhibited upregulated STAT1 expression. STAT1 may be involved in the pathogenesis of IA in T2DM patients. Being the common neurovascular markers, STAT1 may acts as novel therapeutic targets for the treatment of IA and T2DM. |
format | Online Article Text |
id | pubmed-9763588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97635882022-12-21 Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus Tian, Tian Sun, Wenhao Du, Jia Sun, Yafei Front Neurol Neurology To screen for common target genes in intracranial aneurysms (IA) and type 2 diabetes mellitus (T2DM), construct a common transcriptional regulatory network to predict clusters of candidate genes involved in the pathogenesis of T2DM and IA, and identify the common neurovascular markers and pathways in T2DM causing IA. Microarray datasets (GSE55650, GSE25462, GSE26969, GSE75436, and GSE13353) from the GEO database were analyzed in this research. Screening of the IA and the T2DM datasets yielded a total of 126 DEGs, among which 78 were upregulated and 138 were downregulated. Functional enrichment analysis revealed that these DEGs were enriched for a total of 68 GO pathways, including extracellular matrix composition, coagulation regulation, hemostasis regulation, and collagen fiber composition pathways. We also constructed transcriptional regulatory networks, and identified key transcription factors involved in both the conditions. Univariate logistic regression analysis showed that ARNTL2 and STAT1 were significantly associated with the development of T2DM and IA, acting as the common neurovascular markers for both the diseases. In cellular experiments, hyperglycemic microenvironments exhibited upregulated STAT1 expression. STAT1 may be involved in the pathogenesis of IA in T2DM patients. Being the common neurovascular markers, STAT1 may acts as novel therapeutic targets for the treatment of IA and T2DM. Frontiers Media S.A. 2022-12-06 /pmc/articles/PMC9763588/ /pubmed/36561297 http://dx.doi.org/10.3389/fneur.2022.1032038 Text en Copyright © 2022 Tian, Sun, Du and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Tian, Tian Sun, Wenhao Du, Jia Sun, Yafei Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
title | Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
title_full | Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
title_fullStr | Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
title_full_unstemmed | Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
title_short | Analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
title_sort | analysis of co-expression gene network associated with intracranial aneurysm and type 2 diabetes mellitus |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9763588/ https://www.ncbi.nlm.nih.gov/pubmed/36561297 http://dx.doi.org/10.3389/fneur.2022.1032038 |
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