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Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage

[Image: see text] Development of DNA assembly methods made it possible to construct large DNA. However, achieving a large DNA assembly easily, accurately, and at a low cost remains a challenge. This study shows that DNA assembled only by annealing of overlapping single-stranded DNA ends, which are g...

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Autor principal: Nozaki, Shingo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9764419/
https://www.ncbi.nlm.nih.gov/pubmed/36446634
http://dx.doi.org/10.1021/acssynbio.2c00419
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author Nozaki, Shingo
author_facet Nozaki, Shingo
author_sort Nozaki, Shingo
collection PubMed
description [Image: see text] Development of DNA assembly methods made it possible to construct large DNA. However, achieving a large DNA assembly easily, accurately, and at a low cost remains a challenge. This study shows that DNA assembled only by annealing of overlapping single-stranded DNA ends, which are generated by exonuclease treatment, without ligation can be packaged in phage particles and can also be transduced into bacterial cells. Based on this, I developed a simple method to construct long DNA of about 40–50 kb from five to ten PCR fragments using the bacteriophage in vitro packaging system. This method, namely, iPac (in vitroPackaging-assisted DNA assembly), allowed accurate and rapid construction of large plasmids and phage genomes. This simple method will accelerate research in molecular and synthetic biology, including the construction of gene circuits or the engineering of metabolic pathways.
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spelling pubmed-97644192022-12-21 Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage Nozaki, Shingo ACS Synth Biol [Image: see text] Development of DNA assembly methods made it possible to construct large DNA. However, achieving a large DNA assembly easily, accurately, and at a low cost remains a challenge. This study shows that DNA assembled only by annealing of overlapping single-stranded DNA ends, which are generated by exonuclease treatment, without ligation can be packaged in phage particles and can also be transduced into bacterial cells. Based on this, I developed a simple method to construct long DNA of about 40–50 kb from five to ten PCR fragments using the bacteriophage in vitro packaging system. This method, namely, iPac (in vitroPackaging-assisted DNA assembly), allowed accurate and rapid construction of large plasmids and phage genomes. This simple method will accelerate research in molecular and synthetic biology, including the construction of gene circuits or the engineering of metabolic pathways. American Chemical Society 2022-11-29 2022-12-16 /pmc/articles/PMC9764419/ /pubmed/36446634 http://dx.doi.org/10.1021/acssynbio.2c00419 Text en © 2022 The Author. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Nozaki, Shingo
Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
title Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
title_full Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
title_fullStr Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
title_full_unstemmed Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
title_short Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
title_sort rapid and accurate assembly of large dna assisted by in vitro packaging of bacteriophage
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9764419/
https://www.ncbi.nlm.nih.gov/pubmed/36446634
http://dx.doi.org/10.1021/acssynbio.2c00419
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