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Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage
[Image: see text] Development of DNA assembly methods made it possible to construct large DNA. However, achieving a large DNA assembly easily, accurately, and at a low cost remains a challenge. This study shows that DNA assembled only by annealing of overlapping single-stranded DNA ends, which are g...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9764419/ https://www.ncbi.nlm.nih.gov/pubmed/36446634 http://dx.doi.org/10.1021/acssynbio.2c00419 |
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author | Nozaki, Shingo |
author_facet | Nozaki, Shingo |
author_sort | Nozaki, Shingo |
collection | PubMed |
description | [Image: see text] Development of DNA assembly methods made it possible to construct large DNA. However, achieving a large DNA assembly easily, accurately, and at a low cost remains a challenge. This study shows that DNA assembled only by annealing of overlapping single-stranded DNA ends, which are generated by exonuclease treatment, without ligation can be packaged in phage particles and can also be transduced into bacterial cells. Based on this, I developed a simple method to construct long DNA of about 40–50 kb from five to ten PCR fragments using the bacteriophage in vitro packaging system. This method, namely, iPac (in vitroPackaging-assisted DNA assembly), allowed accurate and rapid construction of large plasmids and phage genomes. This simple method will accelerate research in molecular and synthetic biology, including the construction of gene circuits or the engineering of metabolic pathways. |
format | Online Article Text |
id | pubmed-9764419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-97644192022-12-21 Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage Nozaki, Shingo ACS Synth Biol [Image: see text] Development of DNA assembly methods made it possible to construct large DNA. However, achieving a large DNA assembly easily, accurately, and at a low cost remains a challenge. This study shows that DNA assembled only by annealing of overlapping single-stranded DNA ends, which are generated by exonuclease treatment, without ligation can be packaged in phage particles and can also be transduced into bacterial cells. Based on this, I developed a simple method to construct long DNA of about 40–50 kb from five to ten PCR fragments using the bacteriophage in vitro packaging system. This method, namely, iPac (in vitroPackaging-assisted DNA assembly), allowed accurate and rapid construction of large plasmids and phage genomes. This simple method will accelerate research in molecular and synthetic biology, including the construction of gene circuits or the engineering of metabolic pathways. American Chemical Society 2022-11-29 2022-12-16 /pmc/articles/PMC9764419/ /pubmed/36446634 http://dx.doi.org/10.1021/acssynbio.2c00419 Text en © 2022 The Author. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Nozaki, Shingo Rapid and Accurate Assembly of Large DNA Assisted by In Vitro Packaging of Bacteriophage |
title | Rapid and Accurate
Assembly of Large DNA Assisted
by In Vitro Packaging of Bacteriophage |
title_full | Rapid and Accurate
Assembly of Large DNA Assisted
by In Vitro Packaging of Bacteriophage |
title_fullStr | Rapid and Accurate
Assembly of Large DNA Assisted
by In Vitro Packaging of Bacteriophage |
title_full_unstemmed | Rapid and Accurate
Assembly of Large DNA Assisted
by In Vitro Packaging of Bacteriophage |
title_short | Rapid and Accurate
Assembly of Large DNA Assisted
by In Vitro Packaging of Bacteriophage |
title_sort | rapid and accurate
assembly of large dna assisted
by in vitro packaging of bacteriophage |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9764419/ https://www.ncbi.nlm.nih.gov/pubmed/36446634 http://dx.doi.org/10.1021/acssynbio.2c00419 |
work_keys_str_mv | AT nozakishingo rapidandaccurateassemblyoflargednaassistedbyinvitropackagingofbacteriophage |