Cargando…
A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer
Cervical cancer is one of the most common gynecological malignancies. Due to the high heterogeneity of cervical cancer accelerating cancer progression, it is necessary to identify new prognostic markers and treatment regimens for cervical cancer to improve patients’ survival rates. We purpose to con...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9764686/ https://www.ncbi.nlm.nih.gov/pubmed/36536343 http://dx.doi.org/10.1186/s12905-022-02083-4 |
_version_ | 1784853324071174144 |
---|---|
author | Zhang, Ya Qin, Yuankun Li, Danqing Yang, Yingjie |
author_facet | Zhang, Ya Qin, Yuankun Li, Danqing Yang, Yingjie |
author_sort | Zhang, Ya |
collection | PubMed |
description | Cervical cancer is one of the most common gynecological malignancies. Due to the high heterogeneity of cervical cancer accelerating cancer progression, it is necessary to identify new prognostic markers and treatment regimens for cervical cancer to improve patients’ survival rates. We purpose to construct and verify a risk prediction model for cervical cancer patients. Based on the analysis of data from the Gene Expression Omnibus database (GEO) and The Cancer Genome Atlas (TCGA), differences of genes in normal and cancer samples were analyzed and then used analysis of WGCNA along with consistent clustering to construct single-factor + multi-factor risk models. After regression analysis, the target genes were obtained as prognostic genes and prognostic risk models were constructed, and the validity of the risk model was confirmed using the receiver operating characteristic curve (ROC) and Kaplan–Meier curve. Subsequently, the above model was verified on the GSE44001 data validation followed by independent prognostic analysis. Enrichment analysis was conducted by grouping the high and low risks of the model. In addition, differences in immune analysis (immune infiltration, immunotherapy), drug sensitivity, and other levels were counted by the high and low risks groups. In our study, three prognostic genes including APOD, APOC1, and SQLE were obtained, and a risk model was constructed along with validation based on the above-mentioned analysis. According to the model, immune correlation and immunotherapy analyses were carried out, which will provide a theoretical basis and reference value for the exploration and treatment of cervical cancer. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12905-022-02083-4. |
format | Online Article Text |
id | pubmed-9764686 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-97646862022-12-21 A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer Zhang, Ya Qin, Yuankun Li, Danqing Yang, Yingjie BMC Womens Health Research Cervical cancer is one of the most common gynecological malignancies. Due to the high heterogeneity of cervical cancer accelerating cancer progression, it is necessary to identify new prognostic markers and treatment regimens for cervical cancer to improve patients’ survival rates. We purpose to construct and verify a risk prediction model for cervical cancer patients. Based on the analysis of data from the Gene Expression Omnibus database (GEO) and The Cancer Genome Atlas (TCGA), differences of genes in normal and cancer samples were analyzed and then used analysis of WGCNA along with consistent clustering to construct single-factor + multi-factor risk models. After regression analysis, the target genes were obtained as prognostic genes and prognostic risk models were constructed, and the validity of the risk model was confirmed using the receiver operating characteristic curve (ROC) and Kaplan–Meier curve. Subsequently, the above model was verified on the GSE44001 data validation followed by independent prognostic analysis. Enrichment analysis was conducted by grouping the high and low risks of the model. In addition, differences in immune analysis (immune infiltration, immunotherapy), drug sensitivity, and other levels were counted by the high and low risks groups. In our study, three prognostic genes including APOD, APOC1, and SQLE were obtained, and a risk model was constructed along with validation based on the above-mentioned analysis. According to the model, immune correlation and immunotherapy analyses were carried out, which will provide a theoretical basis and reference value for the exploration and treatment of cervical cancer. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12905-022-02083-4. BioMed Central 2022-12-19 /pmc/articles/PMC9764686/ /pubmed/36536343 http://dx.doi.org/10.1186/s12905-022-02083-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Zhang, Ya Qin, Yuankun Li, Danqing Yang, Yingjie A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer |
title | A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer |
title_full | A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer |
title_fullStr | A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer |
title_full_unstemmed | A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer |
title_short | A risk prediction model mediated by genes of APOD/APOC1/SQLE associates with prognosis in cervical cancer |
title_sort | risk prediction model mediated by genes of apod/apoc1/sqle associates with prognosis in cervical cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9764686/ https://www.ncbi.nlm.nih.gov/pubmed/36536343 http://dx.doi.org/10.1186/s12905-022-02083-4 |
work_keys_str_mv | AT zhangya ariskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT qinyuankun ariskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT lidanqing ariskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT yangyingjie ariskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT zhangya riskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT qinyuankun riskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT lidanqing riskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer AT yangyingjie riskpredictionmodelmediatedbygenesofapodapoc1sqleassociateswithprognosisincervicalcancer |