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Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population

BACKGROUND: Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. METHODS: Genotyping was performed using Applied Biosystems Axiom™...

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Autores principales: Sun, Yuxiao, Cheng, Zhaoyun, Guo, Zhiping, Dai, Guoyou, Li, Yongqiang, Chen, Yan, Xie, Ruigang, Wang, Xianqing, Cui, Mingxia, Lu, Guoqing, Wang, Aifeng, Gao, Chuanyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: S. Karger AG 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768296/
https://www.ncbi.nlm.nih.gov/pubmed/36654975
http://dx.doi.org/10.1159/000524849
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author Sun, Yuxiao
Cheng, Zhaoyun
Guo, Zhiping
Dai, Guoyou
Li, Yongqiang
Chen, Yan
Xie, Ruigang
Wang, Xianqing
Cui, Mingxia
Lu, Guoqing
Wang, Aifeng
Gao, Chuanyu
author_facet Sun, Yuxiao
Cheng, Zhaoyun
Guo, Zhiping
Dai, Guoyou
Li, Yongqiang
Chen, Yan
Xie, Ruigang
Wang, Xianqing
Cui, Mingxia
Lu, Guoqing
Wang, Aifeng
Gao, Chuanyu
author_sort Sun, Yuxiao
collection PubMed
description BACKGROUND: Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. METHODS: Genotyping was performed using Applied Biosystems Axiom™ Precision Medicine Diversity Array in 838 individuals, and 6,423,076 single nucleotide polymorphisms were available for genotyping. The relations were examined in an additive genetic model using mixed linear regression and combined with identical by descent matrix. RESULTS: We identified 38 genetic loci (p < 5 × 10<sup>−6</sup>) related to hemorheological traits. In which, LOC102724502-OLIG2 rs28371438 was related to the levels of nd30 (p = 8.58 × 10<sup>−07</sup>), nd300 (p = 1.89 × 10<sup>−06</sup>), erythrocyte rigidity (p = 1.29 × 10<sup>−06</sup>), assigned viscosity (p = 6.20 × 10<sup>−08</sup>) and whole blood high cut relative (p = 7.30 × 10<sup>−08</sup>). The association of STK32B rs4689231 for nd30 (p = 3.85 × 10<sup>−06</sup>) and nd300 (p = 2.94 × 10<sup>−06</sup>) and GTSCR1-LINC01541 rs11661911 for erythrocyte rigidity (p = 9.93 × 10<sup>−09</sup>) and whole blood high cut relative (p = 2.09 × 10<sup>−07</sup>) was found. USP25-MIR99AHG rs1297329 was associated with erythrocyte rigidity (p = 1.81 × 10<sup>−06</sup>) and erythrocyte deformation (p = 1.14 × 10<sup>−06</sup>). Moreover, the association of TMEM232-SLC25A46 rs3985087 and LINC00470-METTL4 rs9966987 for fibrinogen (p = 1.31 × 10<sup>−06</sup> and p = 4.29 × 10<sup>−07</sup>) and plasma viscosity (p = 1.01 × 10<sup>−06</sup> and p = 4.59 × 10<sup>−07</sup>) was found. CONCLUSION: These findings may represent biological candidates for hemorheological indexes and contribute to hemorheological study.
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spelling pubmed-97682962023-01-17 Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population Sun, Yuxiao Cheng, Zhaoyun Guo, Zhiping Dai, Guoyou Li, Yongqiang Chen, Yan Xie, Ruigang Wang, Xianqing Cui, Mingxia Lu, Guoqing Wang, Aifeng Gao, Chuanyu Transfus Med Hemother Research Article BACKGROUND: Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. METHODS: Genotyping was performed using Applied Biosystems Axiom™ Precision Medicine Diversity Array in 838 individuals, and 6,423,076 single nucleotide polymorphisms were available for genotyping. The relations were examined in an additive genetic model using mixed linear regression and combined with identical by descent matrix. RESULTS: We identified 38 genetic loci (p < 5 × 10<sup>−6</sup>) related to hemorheological traits. In which, LOC102724502-OLIG2 rs28371438 was related to the levels of nd30 (p = 8.58 × 10<sup>−07</sup>), nd300 (p = 1.89 × 10<sup>−06</sup>), erythrocyte rigidity (p = 1.29 × 10<sup>−06</sup>), assigned viscosity (p = 6.20 × 10<sup>−08</sup>) and whole blood high cut relative (p = 7.30 × 10<sup>−08</sup>). The association of STK32B rs4689231 for nd30 (p = 3.85 × 10<sup>−06</sup>) and nd300 (p = 2.94 × 10<sup>−06</sup>) and GTSCR1-LINC01541 rs11661911 for erythrocyte rigidity (p = 9.93 × 10<sup>−09</sup>) and whole blood high cut relative (p = 2.09 × 10<sup>−07</sup>) was found. USP25-MIR99AHG rs1297329 was associated with erythrocyte rigidity (p = 1.81 × 10<sup>−06</sup>) and erythrocyte deformation (p = 1.14 × 10<sup>−06</sup>). Moreover, the association of TMEM232-SLC25A46 rs3985087 and LINC00470-METTL4 rs9966987 for fibrinogen (p = 1.31 × 10<sup>−06</sup> and p = 4.29 × 10<sup>−07</sup>) and plasma viscosity (p = 1.01 × 10<sup>−06</sup> and p = 4.59 × 10<sup>−07</sup>) was found. CONCLUSION: These findings may represent biological candidates for hemorheological indexes and contribute to hemorheological study. S. Karger AG 2022-07-05 /pmc/articles/PMC9768296/ /pubmed/36654975 http://dx.doi.org/10.1159/000524849 Text en Copyright © 2022 by The Author(s). Published by S. Karger AG, Basel https://creativecommons.org/licenses/by-nc/4.0/This article is licensed under the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC). Usage and distribution for commercial purposes requires written permission.
spellingShingle Research Article
Sun, Yuxiao
Cheng, Zhaoyun
Guo, Zhiping
Dai, Guoyou
Li, Yongqiang
Chen, Yan
Xie, Ruigang
Wang, Xianqing
Cui, Mingxia
Lu, Guoqing
Wang, Aifeng
Gao, Chuanyu
Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
title Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
title_full Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
title_fullStr Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
title_full_unstemmed Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
title_short Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
title_sort preliminary study of genome-wide association identified novel susceptibility genes for hemorheological indexes in a chinese population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768296/
https://www.ncbi.nlm.nih.gov/pubmed/36654975
http://dx.doi.org/10.1159/000524849
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