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Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population
BACKGROUND: Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. METHODS: Genotyping was performed using Applied Biosystems Axiom™...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
S. Karger AG
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768296/ https://www.ncbi.nlm.nih.gov/pubmed/36654975 http://dx.doi.org/10.1159/000524849 |
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author | Sun, Yuxiao Cheng, Zhaoyun Guo, Zhiping Dai, Guoyou Li, Yongqiang Chen, Yan Xie, Ruigang Wang, Xianqing Cui, Mingxia Lu, Guoqing Wang, Aifeng Gao, Chuanyu |
author_facet | Sun, Yuxiao Cheng, Zhaoyun Guo, Zhiping Dai, Guoyou Li, Yongqiang Chen, Yan Xie, Ruigang Wang, Xianqing Cui, Mingxia Lu, Guoqing Wang, Aifeng Gao, Chuanyu |
author_sort | Sun, Yuxiao |
collection | PubMed |
description | BACKGROUND: Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. METHODS: Genotyping was performed using Applied Biosystems Axiom™ Precision Medicine Diversity Array in 838 individuals, and 6,423,076 single nucleotide polymorphisms were available for genotyping. The relations were examined in an additive genetic model using mixed linear regression and combined with identical by descent matrix. RESULTS: We identified 38 genetic loci (p < 5 × 10<sup>−6</sup>) related to hemorheological traits. In which, LOC102724502-OLIG2 rs28371438 was related to the levels of nd30 (p = 8.58 × 10<sup>−07</sup>), nd300 (p = 1.89 × 10<sup>−06</sup>), erythrocyte rigidity (p = 1.29 × 10<sup>−06</sup>), assigned viscosity (p = 6.20 × 10<sup>−08</sup>) and whole blood high cut relative (p = 7.30 × 10<sup>−08</sup>). The association of STK32B rs4689231 for nd30 (p = 3.85 × 10<sup>−06</sup>) and nd300 (p = 2.94 × 10<sup>−06</sup>) and GTSCR1-LINC01541 rs11661911 for erythrocyte rigidity (p = 9.93 × 10<sup>−09</sup>) and whole blood high cut relative (p = 2.09 × 10<sup>−07</sup>) was found. USP25-MIR99AHG rs1297329 was associated with erythrocyte rigidity (p = 1.81 × 10<sup>−06</sup>) and erythrocyte deformation (p = 1.14 × 10<sup>−06</sup>). Moreover, the association of TMEM232-SLC25A46 rs3985087 and LINC00470-METTL4 rs9966987 for fibrinogen (p = 1.31 × 10<sup>−06</sup> and p = 4.29 × 10<sup>−07</sup>) and plasma viscosity (p = 1.01 × 10<sup>−06</sup> and p = 4.59 × 10<sup>−07</sup>) was found. CONCLUSION: These findings may represent biological candidates for hemorheological indexes and contribute to hemorheological study. |
format | Online Article Text |
id | pubmed-9768296 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | S. Karger AG |
record_format | MEDLINE/PubMed |
spelling | pubmed-97682962023-01-17 Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population Sun, Yuxiao Cheng, Zhaoyun Guo, Zhiping Dai, Guoyou Li, Yongqiang Chen, Yan Xie, Ruigang Wang, Xianqing Cui, Mingxia Lu, Guoqing Wang, Aifeng Gao, Chuanyu Transfus Med Hemother Research Article BACKGROUND: Genome-wide association studies for various hemorheological characteristics have not been reported. We aimed to identify genetic loci associated with hemorheological indexes in a cohort of healthy Chinese Han individuals. METHODS: Genotyping was performed using Applied Biosystems Axiom™ Precision Medicine Diversity Array in 838 individuals, and 6,423,076 single nucleotide polymorphisms were available for genotyping. The relations were examined in an additive genetic model using mixed linear regression and combined with identical by descent matrix. RESULTS: We identified 38 genetic loci (p < 5 × 10<sup>−6</sup>) related to hemorheological traits. In which, LOC102724502-OLIG2 rs28371438 was related to the levels of nd30 (p = 8.58 × 10<sup>−07</sup>), nd300 (p = 1.89 × 10<sup>−06</sup>), erythrocyte rigidity (p = 1.29 × 10<sup>−06</sup>), assigned viscosity (p = 6.20 × 10<sup>−08</sup>) and whole blood high cut relative (p = 7.30 × 10<sup>−08</sup>). The association of STK32B rs4689231 for nd30 (p = 3.85 × 10<sup>−06</sup>) and nd300 (p = 2.94 × 10<sup>−06</sup>) and GTSCR1-LINC01541 rs11661911 for erythrocyte rigidity (p = 9.93 × 10<sup>−09</sup>) and whole blood high cut relative (p = 2.09 × 10<sup>−07</sup>) was found. USP25-MIR99AHG rs1297329 was associated with erythrocyte rigidity (p = 1.81 × 10<sup>−06</sup>) and erythrocyte deformation (p = 1.14 × 10<sup>−06</sup>). Moreover, the association of TMEM232-SLC25A46 rs3985087 and LINC00470-METTL4 rs9966987 for fibrinogen (p = 1.31 × 10<sup>−06</sup> and p = 4.29 × 10<sup>−07</sup>) and plasma viscosity (p = 1.01 × 10<sup>−06</sup> and p = 4.59 × 10<sup>−07</sup>) was found. CONCLUSION: These findings may represent biological candidates for hemorheological indexes and contribute to hemorheological study. S. Karger AG 2022-07-05 /pmc/articles/PMC9768296/ /pubmed/36654975 http://dx.doi.org/10.1159/000524849 Text en Copyright © 2022 by The Author(s). Published by S. Karger AG, Basel https://creativecommons.org/licenses/by-nc/4.0/This article is licensed under the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC). Usage and distribution for commercial purposes requires written permission. |
spellingShingle | Research Article Sun, Yuxiao Cheng, Zhaoyun Guo, Zhiping Dai, Guoyou Li, Yongqiang Chen, Yan Xie, Ruigang Wang, Xianqing Cui, Mingxia Lu, Guoqing Wang, Aifeng Gao, Chuanyu Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population |
title | Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population |
title_full | Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population |
title_fullStr | Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population |
title_full_unstemmed | Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population |
title_short | Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population |
title_sort | preliminary study of genome-wide association identified novel susceptibility genes for hemorheological indexes in a chinese population |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768296/ https://www.ncbi.nlm.nih.gov/pubmed/36654975 http://dx.doi.org/10.1159/000524849 |
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