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Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity

DDX56, a member of the RNA helicase family, is upregulated in colon adenocarcinoma, lung squamous cell carcinoma, and osteosarcoma. However, the relationships between DDX56 and other tumors are not clear, and the molecular mechanism of its action is not fully understood. Here, we explore the biologi...

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Autores principales: Ruan, Zhaohui, Zhang, Yuetong, Quan, Qi, Jiang, Jiaxin, Wang, Qianyu, Zhang, Yujing, Peng, Roujun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768347/
https://www.ncbi.nlm.nih.gov/pubmed/36568395
http://dx.doi.org/10.3389/fgene.2022.1004467
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author Ruan, Zhaohui
Zhang, Yuetong
Quan, Qi
Jiang, Jiaxin
Wang, Qianyu
Zhang, Yujing
Peng, Roujun
author_facet Ruan, Zhaohui
Zhang, Yuetong
Quan, Qi
Jiang, Jiaxin
Wang, Qianyu
Zhang, Yujing
Peng, Roujun
author_sort Ruan, Zhaohui
collection PubMed
description DDX56, a member of the RNA helicase family, is upregulated in colon adenocarcinoma, lung squamous cell carcinoma, and osteosarcoma. However, the relationships between DDX56 and other tumors are not clear, and the molecular mechanism of its action is not fully understood. Here, we explore the biological functions of DDX56 in 31 solid tumors and clarify that DDX56 can promote oncogenesis and progression in multiple tumor types based on multi-omics data. Bioinformatics analysis revealed that the cancer-promoting effects of DDX56 were achieved by facilitating tumor cell proliferation, inhibiting apoptosis, inducing drug resistance, and influencing immune cell infiltration. Furthermore, we found that copy number alterations and low DNA methylation of DDX56 were likely to be related to aberrantly high DDX56 expression. Our results suggest that DDX56 is a potential pan-cancer biomarker that could be used to predict survival and response to therapy, as well as a potential novel therapeutic target. We validated some of our results and illustrated their reliability using CRISPR Screens data. In conclusion, our results clarify the role of DDX56 in the occurrence and development of multiple cancers and provide insight into the molecular mechanisms involved in the process of pathogenesis, indicating a direction for future research on DDX56 in cancers.
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spelling pubmed-97683472022-12-22 Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity Ruan, Zhaohui Zhang, Yuetong Quan, Qi Jiang, Jiaxin Wang, Qianyu Zhang, Yujing Peng, Roujun Front Genet Genetics DDX56, a member of the RNA helicase family, is upregulated in colon adenocarcinoma, lung squamous cell carcinoma, and osteosarcoma. However, the relationships between DDX56 and other tumors are not clear, and the molecular mechanism of its action is not fully understood. Here, we explore the biological functions of DDX56 in 31 solid tumors and clarify that DDX56 can promote oncogenesis and progression in multiple tumor types based on multi-omics data. Bioinformatics analysis revealed that the cancer-promoting effects of DDX56 were achieved by facilitating tumor cell proliferation, inhibiting apoptosis, inducing drug resistance, and influencing immune cell infiltration. Furthermore, we found that copy number alterations and low DNA methylation of DDX56 were likely to be related to aberrantly high DDX56 expression. Our results suggest that DDX56 is a potential pan-cancer biomarker that could be used to predict survival and response to therapy, as well as a potential novel therapeutic target. We validated some of our results and illustrated their reliability using CRISPR Screens data. In conclusion, our results clarify the role of DDX56 in the occurrence and development of multiple cancers and provide insight into the molecular mechanisms involved in the process of pathogenesis, indicating a direction for future research on DDX56 in cancers. Frontiers Media S.A. 2022-12-07 /pmc/articles/PMC9768347/ /pubmed/36568395 http://dx.doi.org/10.3389/fgene.2022.1004467 Text en Copyright © 2022 Ruan, Zhang, Quan, Jiang, Wang, Zhang and Peng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Ruan, Zhaohui
Zhang, Yuetong
Quan, Qi
Jiang, Jiaxin
Wang, Qianyu
Zhang, Yujing
Peng, Roujun
Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
title Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
title_full Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
title_fullStr Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
title_full_unstemmed Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
title_short Pan-cancer analysis identifies DDX56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
title_sort pan-cancer analysis identifies ddx56 as a prognostic biomarker associated with immune infiltration and drug sensitivity
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768347/
https://www.ncbi.nlm.nih.gov/pubmed/36568395
http://dx.doi.org/10.3389/fgene.2022.1004467
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