Cargando…

Biomolecular condensate phase diagrams with a combinatorial microdroplet platform

The assembly of biomolecules into condensates is a fundamental process underlying the organisation of the intracellular space and the regulation of many cellular functions. Mapping and characterising phase behaviour of biomolecules is essential to understand the mechanisms of condensate assembly, an...

Descripción completa

Detalles Bibliográficos
Autores principales: Arter, William E., Qi, Runzhang, Erkamp, Nadia A., Krainer, Georg, Didi, Kieran, Welsh, Timothy J., Acker, Julia, Nixon-Abell, Jonathan, Qamar, Seema, Guillén-Boixet, Jordina, Franzmann, Titus M., Kuster, David, Hyman, Anthony A., Borodavka, Alexander, George-Hyslop, Peter St, Alberti, Simon, Knowles, Tuomas P. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768726/
https://www.ncbi.nlm.nih.gov/pubmed/36543777
http://dx.doi.org/10.1038/s41467-022-35265-7
_version_ 1784854233756991488
author Arter, William E.
Qi, Runzhang
Erkamp, Nadia A.
Krainer, Georg
Didi, Kieran
Welsh, Timothy J.
Acker, Julia
Nixon-Abell, Jonathan
Qamar, Seema
Guillén-Boixet, Jordina
Franzmann, Titus M.
Kuster, David
Hyman, Anthony A.
Borodavka, Alexander
George-Hyslop, Peter St
Alberti, Simon
Knowles, Tuomas P. J.
author_facet Arter, William E.
Qi, Runzhang
Erkamp, Nadia A.
Krainer, Georg
Didi, Kieran
Welsh, Timothy J.
Acker, Julia
Nixon-Abell, Jonathan
Qamar, Seema
Guillén-Boixet, Jordina
Franzmann, Titus M.
Kuster, David
Hyman, Anthony A.
Borodavka, Alexander
George-Hyslop, Peter St
Alberti, Simon
Knowles, Tuomas P. J.
author_sort Arter, William E.
collection PubMed
description The assembly of biomolecules into condensates is a fundamental process underlying the organisation of the intracellular space and the regulation of many cellular functions. Mapping and characterising phase behaviour of biomolecules is essential to understand the mechanisms of condensate assembly, and to develop therapeutic strategies targeting biomolecular condensate systems. A central concept for characterising phase-separating systems is the phase diagram. Phase diagrams are typically built from numerous individual measurements sampling different parts of the parameter space. However, even when performed in microwell plate format, this process is slow, low throughput and requires significant sample consumption. To address this challenge, we present here a combinatorial droplet microfluidic platform, termed PhaseScan, for rapid and high-resolution acquisition of multidimensional biomolecular phase diagrams. Using this platform, we characterise the phase behaviour of a wide range of systems under a variety of conditions and demonstrate that this approach allows the quantitative characterisation of the effect of small molecules on biomolecular phase transitions.
format Online
Article
Text
id pubmed-9768726
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-97687262022-12-21 Biomolecular condensate phase diagrams with a combinatorial microdroplet platform Arter, William E. Qi, Runzhang Erkamp, Nadia A. Krainer, Georg Didi, Kieran Welsh, Timothy J. Acker, Julia Nixon-Abell, Jonathan Qamar, Seema Guillén-Boixet, Jordina Franzmann, Titus M. Kuster, David Hyman, Anthony A. Borodavka, Alexander George-Hyslop, Peter St Alberti, Simon Knowles, Tuomas P. J. Nat Commun Article The assembly of biomolecules into condensates is a fundamental process underlying the organisation of the intracellular space and the regulation of many cellular functions. Mapping and characterising phase behaviour of biomolecules is essential to understand the mechanisms of condensate assembly, and to develop therapeutic strategies targeting biomolecular condensate systems. A central concept for characterising phase-separating systems is the phase diagram. Phase diagrams are typically built from numerous individual measurements sampling different parts of the parameter space. However, even when performed in microwell plate format, this process is slow, low throughput and requires significant sample consumption. To address this challenge, we present here a combinatorial droplet microfluidic platform, termed PhaseScan, for rapid and high-resolution acquisition of multidimensional biomolecular phase diagrams. Using this platform, we characterise the phase behaviour of a wide range of systems under a variety of conditions and demonstrate that this approach allows the quantitative characterisation of the effect of small molecules on biomolecular phase transitions. Nature Publishing Group UK 2022-12-21 /pmc/articles/PMC9768726/ /pubmed/36543777 http://dx.doi.org/10.1038/s41467-022-35265-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Arter, William E.
Qi, Runzhang
Erkamp, Nadia A.
Krainer, Georg
Didi, Kieran
Welsh, Timothy J.
Acker, Julia
Nixon-Abell, Jonathan
Qamar, Seema
Guillén-Boixet, Jordina
Franzmann, Titus M.
Kuster, David
Hyman, Anthony A.
Borodavka, Alexander
George-Hyslop, Peter St
Alberti, Simon
Knowles, Tuomas P. J.
Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
title Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
title_full Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
title_fullStr Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
title_full_unstemmed Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
title_short Biomolecular condensate phase diagrams with a combinatorial microdroplet platform
title_sort biomolecular condensate phase diagrams with a combinatorial microdroplet platform
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9768726/
https://www.ncbi.nlm.nih.gov/pubmed/36543777
http://dx.doi.org/10.1038/s41467-022-35265-7
work_keys_str_mv AT arterwilliame biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT qirunzhang biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT erkampnadiaa biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT krainergeorg biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT didikieran biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT welshtimothyj biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT ackerjulia biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT nixonabelljonathan biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT qamarseema biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT guillenboixetjordina biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT franzmanntitusm biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT kusterdavid biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT hymananthonya biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT borodavkaalexander biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT georgehysloppeterst biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT albertisimon biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform
AT knowlestuomaspj biomolecularcondensatephasediagramswithacombinatorialmicrodropletplatform