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From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps

DNA barcoding has been used worldwide to identify biological specimens and to delimit species. It represents a cost‐effective, fast, and efficient way to assess biodiversity with help of the public Barcode of Life Database (BOLD) accounting for more than 236,000 animal species and more than 10 milli...

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Autores principales: Ottati, Sara, Eberle, Jonas, Rulik, Björn, Köhler, Frank, Ahrens, Dirk
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9771709/
https://www.ncbi.nlm.nih.gov/pubmed/36568864
http://dx.doi.org/10.1002/ece3.9650
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author Ottati, Sara
Eberle, Jonas
Rulik, Björn
Köhler, Frank
Ahrens, Dirk
author_facet Ottati, Sara
Eberle, Jonas
Rulik, Björn
Köhler, Frank
Ahrens, Dirk
author_sort Ottati, Sara
collection PubMed
description DNA barcoding has been used worldwide to identify biological specimens and to delimit species. It represents a cost‐effective, fast, and efficient way to assess biodiversity with help of the public Barcode of Life Database (BOLD) accounting for more than 236,000 animal species and more than 10 million barcode sequences. Here, we performed a meta‐analysis of available barcode data of central European Coleoptera to detect intraspecific genetic patterns among ecological groups in relation to geographic distance with the aim to investigate a possible link between infraspecific variation and species ecology. We collected information regarding feeding style, body size, as well as habitat and biotope preferences. Mantel tests and two variants of Procrustes analysis, both involving the Principal Coordinates Neighborhood Matrices (PCNM) approach, were applied on genetic and geographic distance matrices. However, significance levels were too low to further use the outcome for further trait investigation: these were in mean for all ecological guilds only 7.5, 9.4, or 15.6% for PCNM + PCA, NMDS + PCA, and Mantel test, respectively, or at best 28% for a single guild. Our study confirmed that certain ecological traits were associated with higher species diversity and foster stronger genetic differentiation. Results suggest that increased numbers of species, sampling localities, and specimens for a chosen area of interest may give new insights to explore barcode data and species ecology for the scope of conservation on a larger scale. We performed a meta‐analysis of available barcode data of central European beetles to detect intraspecific genetic patterns among ecological groups in relation to geographic distance, regarding feeding style, body size, as well as habitat and biotope preferences. Our study confirmed that certain ecological traits were associated with higher species diversity and foster stronger genetic differentiation. However, significance levels were too low to further use the outcome for further trait investigation.
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spelling pubmed-97717092022-12-23 From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps Ottati, Sara Eberle, Jonas Rulik, Björn Köhler, Frank Ahrens, Dirk Ecol Evol Research Articles DNA barcoding has been used worldwide to identify biological specimens and to delimit species. It represents a cost‐effective, fast, and efficient way to assess biodiversity with help of the public Barcode of Life Database (BOLD) accounting for more than 236,000 animal species and more than 10 million barcode sequences. Here, we performed a meta‐analysis of available barcode data of central European Coleoptera to detect intraspecific genetic patterns among ecological groups in relation to geographic distance with the aim to investigate a possible link between infraspecific variation and species ecology. We collected information regarding feeding style, body size, as well as habitat and biotope preferences. Mantel tests and two variants of Procrustes analysis, both involving the Principal Coordinates Neighborhood Matrices (PCNM) approach, were applied on genetic and geographic distance matrices. However, significance levels were too low to further use the outcome for further trait investigation: these were in mean for all ecological guilds only 7.5, 9.4, or 15.6% for PCNM + PCA, NMDS + PCA, and Mantel test, respectively, or at best 28% for a single guild. Our study confirmed that certain ecological traits were associated with higher species diversity and foster stronger genetic differentiation. Results suggest that increased numbers of species, sampling localities, and specimens for a chosen area of interest may give new insights to explore barcode data and species ecology for the scope of conservation on a larger scale. We performed a meta‐analysis of available barcode data of central European beetles to detect intraspecific genetic patterns among ecological groups in relation to geographic distance, regarding feeding style, body size, as well as habitat and biotope preferences. Our study confirmed that certain ecological traits were associated with higher species diversity and foster stronger genetic differentiation. However, significance levels were too low to further use the outcome for further trait investigation. John Wiley and Sons Inc. 2022-12-21 /pmc/articles/PMC9771709/ /pubmed/36568864 http://dx.doi.org/10.1002/ece3.9650 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Ottati, Sara
Eberle, Jonas
Rulik, Björn
Köhler, Frank
Ahrens, Dirk
From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps
title From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps
title_full From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps
title_fullStr From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps
title_full_unstemmed From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps
title_short From DNA barcodes to ecology: Meta‐analysis of central European beetles reveal link with species ecology but also to data pattern and gaps
title_sort from dna barcodes to ecology: meta‐analysis of central european beetles reveal link with species ecology but also to data pattern and gaps
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9771709/
https://www.ncbi.nlm.nih.gov/pubmed/36568864
http://dx.doi.org/10.1002/ece3.9650
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