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Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma

Lung cancer is one of the most common malignant tumors, and ranks high in the list of mortality due to cancers. Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer. Despite progress in the diagnosis and treatment of lung cancer, the prognosis of these patients remains dismal. Theref...

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Autores principales: Zhang, Peng, Wang, Wenmiao, Liu, Lei, Li, HouQiang, Sha, XinYu, Wang, Silin, Huang, Zhanghao, Zhou, Youlang, Shi, Jiahai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9772350/
https://www.ncbi.nlm.nih.gov/pubmed/36543847
http://dx.doi.org/10.1038/s41598-022-26427-0
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author Zhang, Peng
Wang, Wenmiao
Liu, Lei
Li, HouQiang
Sha, XinYu
Wang, Silin
Huang, Zhanghao
Zhou, Youlang
Shi, Jiahai
author_facet Zhang, Peng
Wang, Wenmiao
Liu, Lei
Li, HouQiang
Sha, XinYu
Wang, Silin
Huang, Zhanghao
Zhou, Youlang
Shi, Jiahai
author_sort Zhang, Peng
collection PubMed
description Lung cancer is one of the most common malignant tumors, and ranks high in the list of mortality due to cancers. Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer. Despite progress in the diagnosis and treatment of lung cancer, the prognosis of these patients remains dismal. Therefore, it is crucial to identify the predictors and treatment targets of lung cancer to provide appropriate treatments and improve patient prognosis. In this study, the gene modules related to immunotherapy were screened by weighted gene co-expression network analysis (WGCNA). Using unsupervised clustering, patients in The Cancer Genome Atlas (TCGA) were divided into three clusters based on the gene expression. Next, gene clustering was performed on the prognosis-related differential genes, and a six-gene prognosis model (comprising PLK1, HMMR, ANLN, SLC2A1, SFTPB, and CYP4B1) was constructed using least absolute shrinkage and selection operator (LASSO) analysis. Patients with LUAD were divided into two groups: high-risk and low-risk. Significant differences were found in the survival, immune cell infiltration, Tumor mutational burden (TMB), immune checkpoints, and immune microenvironment between the high- and low-risk groups. Finally, the accuracy of the prognostic model was verified in the Gene Expression Omnibus (GEO) dataset in patients with LUAD (GSE30219, GSE31210, GSE50081, GSE72094).
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spelling pubmed-97723502022-12-23 Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma Zhang, Peng Wang, Wenmiao Liu, Lei Li, HouQiang Sha, XinYu Wang, Silin Huang, Zhanghao Zhou, Youlang Shi, Jiahai Sci Rep Article Lung cancer is one of the most common malignant tumors, and ranks high in the list of mortality due to cancers. Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer. Despite progress in the diagnosis and treatment of lung cancer, the prognosis of these patients remains dismal. Therefore, it is crucial to identify the predictors and treatment targets of lung cancer to provide appropriate treatments and improve patient prognosis. In this study, the gene modules related to immunotherapy were screened by weighted gene co-expression network analysis (WGCNA). Using unsupervised clustering, patients in The Cancer Genome Atlas (TCGA) were divided into three clusters based on the gene expression. Next, gene clustering was performed on the prognosis-related differential genes, and a six-gene prognosis model (comprising PLK1, HMMR, ANLN, SLC2A1, SFTPB, and CYP4B1) was constructed using least absolute shrinkage and selection operator (LASSO) analysis. Patients with LUAD were divided into two groups: high-risk and low-risk. Significant differences were found in the survival, immune cell infiltration, Tumor mutational burden (TMB), immune checkpoints, and immune microenvironment between the high- and low-risk groups. Finally, the accuracy of the prognostic model was verified in the Gene Expression Omnibus (GEO) dataset in patients with LUAD (GSE30219, GSE31210, GSE50081, GSE72094). Nature Publishing Group UK 2022-12-21 /pmc/articles/PMC9772350/ /pubmed/36543847 http://dx.doi.org/10.1038/s41598-022-26427-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhang, Peng
Wang, Wenmiao
Liu, Lei
Li, HouQiang
Sha, XinYu
Wang, Silin
Huang, Zhanghao
Zhou, Youlang
Shi, Jiahai
Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
title Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
title_full Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
title_fullStr Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
title_full_unstemmed Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
title_short Analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
title_sort analysis of prognostic model based on immunotherapy related genes in lung adenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9772350/
https://www.ncbi.nlm.nih.gov/pubmed/36543847
http://dx.doi.org/10.1038/s41598-022-26427-0
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