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Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms
BACKGROUND: Arylacetamide deacetylase (AADAC) is a lipolytic enzyme involved in xenobiotic metabolism. The characterization in terms of activity and substrate preference has been limited to a few mammalian species. The potential role and catalytic activities of AADAC from other organisms are still p...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9772364/ https://www.ncbi.nlm.nih.gov/pubmed/36542226 http://dx.doi.org/10.1186/s43141-022-00443-z |
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author | Diaz-Vidal, Tania Romero-Olivas, Christian Berenice Martínez-Pérez, Raúl Balam |
author_facet | Diaz-Vidal, Tania Romero-Olivas, Christian Berenice Martínez-Pérez, Raúl Balam |
author_sort | Diaz-Vidal, Tania |
collection | PubMed |
description | BACKGROUND: Arylacetamide deacetylase (AADAC) is a lipolytic enzyme involved in xenobiotic metabolism. The characterization in terms of activity and substrate preference has been limited to a few mammalian species. The potential role and catalytic activities of AADAC from other organisms are still poorly understood. Therefore, in this work, the physicochemical properties, proteomic analysis, and protein-protein interactions from Gnathostomata organisms were investigated. RESULTS: The analysis were performed with 142 orthologue sequences with ~ 48–100% identity with human AADAC. The catalytic motif HGG[A/G] tetrapeptide block was conserved through all AADAC orthologues. Four variations were found in the consensus pentapeptide GXSXG sequence (GDSAG, GESAG, GDSSG, and GSSSG), and a novel motif YXLXP was found. The prediction of N-glycosylation sites projected 4, 1, 6, and 4 different patterns for amphibians, birds, mammals, and reptiles, respectively. The transmembrane regions of AADAC orthologues were not conserved among groups, and variations in the number and orientation of the active site and C-terminal carboxyl were observed among the sequences studied. The protein-protein interaction of AADAC orthologues were related to cancer, lipid, and xenobiotic metabolism genes. CONCLUSION: The findings from this computational analysis offer new insight into one of the main enzymes involved in xenobiotic metabolism from mammals, reptiles, amphibians, and birds and its potential use in medical and veterinarian biotechnological approaches. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s43141-022-00443-z. |
format | Online Article Text |
id | pubmed-9772364 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-97723642023-01-17 Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms Diaz-Vidal, Tania Romero-Olivas, Christian Berenice Martínez-Pérez, Raúl Balam J Genet Eng Biotechnol Research BACKGROUND: Arylacetamide deacetylase (AADAC) is a lipolytic enzyme involved in xenobiotic metabolism. The characterization in terms of activity and substrate preference has been limited to a few mammalian species. The potential role and catalytic activities of AADAC from other organisms are still poorly understood. Therefore, in this work, the physicochemical properties, proteomic analysis, and protein-protein interactions from Gnathostomata organisms were investigated. RESULTS: The analysis were performed with 142 orthologue sequences with ~ 48–100% identity with human AADAC. The catalytic motif HGG[A/G] tetrapeptide block was conserved through all AADAC orthologues. Four variations were found in the consensus pentapeptide GXSXG sequence (GDSAG, GESAG, GDSSG, and GSSSG), and a novel motif YXLXP was found. The prediction of N-glycosylation sites projected 4, 1, 6, and 4 different patterns for amphibians, birds, mammals, and reptiles, respectively. The transmembrane regions of AADAC orthologues were not conserved among groups, and variations in the number and orientation of the active site and C-terminal carboxyl were observed among the sequences studied. The protein-protein interaction of AADAC orthologues were related to cancer, lipid, and xenobiotic metabolism genes. CONCLUSION: The findings from this computational analysis offer new insight into one of the main enzymes involved in xenobiotic metabolism from mammals, reptiles, amphibians, and birds and its potential use in medical and veterinarian biotechnological approaches. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s43141-022-00443-z. Springer Berlin Heidelberg 2022-12-21 /pmc/articles/PMC9772364/ /pubmed/36542226 http://dx.doi.org/10.1186/s43141-022-00443-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Diaz-Vidal, Tania Romero-Olivas, Christian Berenice Martínez-Pérez, Raúl Balam Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms |
title | Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms |
title_full | Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms |
title_fullStr | Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms |
title_full_unstemmed | Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms |
title_short | Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms |
title_sort | characterization, comparative, and functional analysis of arylacetamide deacetylase from gnathostomata organisms |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9772364/ https://www.ncbi.nlm.nih.gov/pubmed/36542226 http://dx.doi.org/10.1186/s43141-022-00443-z |
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