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Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora
BACKGROUND: In insects, the chemosensory system is crucial in guiding their behaviors for survival. Plagiodera versicolora (Coleoptera: Chrysomelidae), is a worldwide leaf-eating forest pest in salicaceous trees. There is little known about the chemosensory genes in P. versicolora. Here, we conducte...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9773597/ https://www.ncbi.nlm.nih.gov/pubmed/36544089 http://dx.doi.org/10.1186/s12864-022-09079-2 |
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author | Wu, Zhe-Ran Fan, Jian-Ting Tong, Na Guo, Jin-Meng Li, Yang Lu, Min Liu, Xiao-Long |
author_facet | Wu, Zhe-Ran Fan, Jian-Ting Tong, Na Guo, Jin-Meng Li, Yang Lu, Min Liu, Xiao-Long |
author_sort | Wu, Zhe-Ran |
collection | PubMed |
description | BACKGROUND: In insects, the chemosensory system is crucial in guiding their behaviors for survival. Plagiodera versicolora (Coleoptera: Chrysomelidae), is a worldwide leaf-eating forest pest in salicaceous trees. There is little known about the chemosensory genes in P. versicolora. Here, we conducted a transcriptome analysis of larvae heads in P. versicolora. RESULTS: In this study, 29 odorant binding proteins (OBPs), 6 chemosensory proteins (CSPs), 14 odorant receptors (ORs), 13 gustatory receptors (GRs), 8 ionotropic receptors (IRs) and 4 sensory neuron membrane proteins (SNMPs) were identified by transcriptome analysis. Compared to the previous antennae and foreleg transcriptome data in adults, 12 OBPs, 2 CSPs, 5 ORs, 4 IRs, and 7 GRs were newly identified in the larvae. Phylogenetic analyses were conducted and found a new candidate CO(2) receptor (PverGR18) and a new sugar receptor (PverGR23) in the tree of GRs. Subsequently, the dynamic expression profiles of various genes were analyzed by quantitative real-time PCR. The results showed that PverOBP31, OBP34, OBP35, OBP38, and OBP40 were highly expressed in larvae, PverOBP33 and OBP37 were highly expressed in pupae, and PverCSP13 was highly expressed in eggs, respectively. CONCLUSIONS: We identified a total of 74 putative chemosensory genes based on a transcriptome analysis of larvae heads in P. versicolora. This work provides new information for functional studies on the chemoreception mechanism in P. versicolora. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-09079-2. |
format | Online Article Text |
id | pubmed-9773597 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-97735972022-12-23 Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora Wu, Zhe-Ran Fan, Jian-Ting Tong, Na Guo, Jin-Meng Li, Yang Lu, Min Liu, Xiao-Long BMC Genomics Research BACKGROUND: In insects, the chemosensory system is crucial in guiding their behaviors for survival. Plagiodera versicolora (Coleoptera: Chrysomelidae), is a worldwide leaf-eating forest pest in salicaceous trees. There is little known about the chemosensory genes in P. versicolora. Here, we conducted a transcriptome analysis of larvae heads in P. versicolora. RESULTS: In this study, 29 odorant binding proteins (OBPs), 6 chemosensory proteins (CSPs), 14 odorant receptors (ORs), 13 gustatory receptors (GRs), 8 ionotropic receptors (IRs) and 4 sensory neuron membrane proteins (SNMPs) were identified by transcriptome analysis. Compared to the previous antennae and foreleg transcriptome data in adults, 12 OBPs, 2 CSPs, 5 ORs, 4 IRs, and 7 GRs were newly identified in the larvae. Phylogenetic analyses were conducted and found a new candidate CO(2) receptor (PverGR18) and a new sugar receptor (PverGR23) in the tree of GRs. Subsequently, the dynamic expression profiles of various genes were analyzed by quantitative real-time PCR. The results showed that PverOBP31, OBP34, OBP35, OBP38, and OBP40 were highly expressed in larvae, PverOBP33 and OBP37 were highly expressed in pupae, and PverCSP13 was highly expressed in eggs, respectively. CONCLUSIONS: We identified a total of 74 putative chemosensory genes based on a transcriptome analysis of larvae heads in P. versicolora. This work provides new information for functional studies on the chemoreception mechanism in P. versicolora. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-09079-2. BioMed Central 2022-12-22 /pmc/articles/PMC9773597/ /pubmed/36544089 http://dx.doi.org/10.1186/s12864-022-09079-2 Text en © The Author(s) 2022, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wu, Zhe-Ran Fan, Jian-Ting Tong, Na Guo, Jin-Meng Li, Yang Lu, Min Liu, Xiao-Long Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora |
title | Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora |
title_full | Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora |
title_fullStr | Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora |
title_full_unstemmed | Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora |
title_short | Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora |
title_sort | transcriptome analysis and identification of chemosensory genes in the larvae of plagiodera versicolora |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9773597/ https://www.ncbi.nlm.nih.gov/pubmed/36544089 http://dx.doi.org/10.1186/s12864-022-09079-2 |
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