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Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction

A recently introduced model-based deep learning (MoDL) technique successfully incorporates convolutional neural network (CNN)-based regularizers into physics-based parallel imaging reconstruction using a small number of network parameters. Wave-controlled aliasing in parallel imaging (CAIPI) is an e...

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Autores principales: Cho, Jaejin, Gagoski, Borjan, Kim, Tae Hyung, Tian, Qiyuan, Frost, Robert, Chatnuntawech, Itthi, Bilgic, Berkin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9774601/
https://www.ncbi.nlm.nih.gov/pubmed/36550942
http://dx.doi.org/10.3390/bioengineering9120736
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author Cho, Jaejin
Gagoski, Borjan
Kim, Tae Hyung
Tian, Qiyuan
Frost, Robert
Chatnuntawech, Itthi
Bilgic, Berkin
author_facet Cho, Jaejin
Gagoski, Borjan
Kim, Tae Hyung
Tian, Qiyuan
Frost, Robert
Chatnuntawech, Itthi
Bilgic, Berkin
author_sort Cho, Jaejin
collection PubMed
description A recently introduced model-based deep learning (MoDL) technique successfully incorporates convolutional neural network (CNN)-based regularizers into physics-based parallel imaging reconstruction using a small number of network parameters. Wave-controlled aliasing in parallel imaging (CAIPI) is an emerging parallel imaging method that accelerates imaging acquisition by employing sinusoidal gradients in the phase- and slice/partition-encoding directions during the readout to take better advantage of 3D coil sensitivity profiles. We propose wave-encoded MoDL (wave-MoDL) combining the wave-encoding strategy with unrolled network constraints for highly accelerated 3D imaging while enforcing data consistency. We extend wave-MoDL to reconstruct multicontrast data with CAIPI sampling patterns to leverage similarity between multiple images to improve the reconstruction quality. We further exploit this to enable rapid quantitative imaging using an interleaved look-locker acquisition sequence with T(2) preparation pulse (3D-QALAS). Wave-MoDL enables a 40 s MPRAGE acquisition at 1 mm resolution at 16-fold acceleration. For quantitative imaging, wave-MoDL permits a 1:50 min acquisition for T(1), T(2), and proton density mapping at 1 mm resolution at 12-fold acceleration, from which contrast-weighted images can be synthesized as well. In conclusion, wave-MoDL allows rapid MR acquisition and high-fidelity image reconstruction and may facilitate clinical and neuroscientific applications by incorporating unrolled neural networks into wave-CAIPI reconstruction.
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spelling pubmed-97746012022-12-23 Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction Cho, Jaejin Gagoski, Borjan Kim, Tae Hyung Tian, Qiyuan Frost, Robert Chatnuntawech, Itthi Bilgic, Berkin Bioengineering (Basel) Article A recently introduced model-based deep learning (MoDL) technique successfully incorporates convolutional neural network (CNN)-based regularizers into physics-based parallel imaging reconstruction using a small number of network parameters. Wave-controlled aliasing in parallel imaging (CAIPI) is an emerging parallel imaging method that accelerates imaging acquisition by employing sinusoidal gradients in the phase- and slice/partition-encoding directions during the readout to take better advantage of 3D coil sensitivity profiles. We propose wave-encoded MoDL (wave-MoDL) combining the wave-encoding strategy with unrolled network constraints for highly accelerated 3D imaging while enforcing data consistency. We extend wave-MoDL to reconstruct multicontrast data with CAIPI sampling patterns to leverage similarity between multiple images to improve the reconstruction quality. We further exploit this to enable rapid quantitative imaging using an interleaved look-locker acquisition sequence with T(2) preparation pulse (3D-QALAS). Wave-MoDL enables a 40 s MPRAGE acquisition at 1 mm resolution at 16-fold acceleration. For quantitative imaging, wave-MoDL permits a 1:50 min acquisition for T(1), T(2), and proton density mapping at 1 mm resolution at 12-fold acceleration, from which contrast-weighted images can be synthesized as well. In conclusion, wave-MoDL allows rapid MR acquisition and high-fidelity image reconstruction and may facilitate clinical and neuroscientific applications by incorporating unrolled neural networks into wave-CAIPI reconstruction. MDPI 2022-11-29 /pmc/articles/PMC9774601/ /pubmed/36550942 http://dx.doi.org/10.3390/bioengineering9120736 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cho, Jaejin
Gagoski, Borjan
Kim, Tae Hyung
Tian, Qiyuan
Frost, Robert
Chatnuntawech, Itthi
Bilgic, Berkin
Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction
title Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction
title_full Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction
title_fullStr Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction
title_full_unstemmed Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction
title_short Wave-Encoded Model-Based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction
title_sort wave-encoded model-based deep learning for highly accelerated imaging with joint reconstruction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9774601/
https://www.ncbi.nlm.nih.gov/pubmed/36550942
http://dx.doi.org/10.3390/bioengineering9120736
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