Cargando…

Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis

[Image: see text] Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO(2) reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a nota...

Descripción completa

Detalles Bibliográficos
Autores principales: Oliveira, Ana Rita, Mota, Cristiano, Klymanska, Kateryna, Biaso, Frédéric, Romão, Maria João, Guigliarelli, Bruno, Pereira, Inês Cardoso
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9774666/
https://www.ncbi.nlm.nih.gov/pubmed/35766974
http://dx.doi.org/10.1021/acschembio.2c00336
_version_ 1784855465389195264
author Oliveira, Ana Rita
Mota, Cristiano
Klymanska, Kateryna
Biaso, Frédéric
Romão, Maria João
Guigliarelli, Bruno
Pereira, Inês Cardoso
author_facet Oliveira, Ana Rita
Mota, Cristiano
Klymanska, Kateryna
Biaso, Frédéric
Romão, Maria João
Guigliarelli, Bruno
Pereira, Inês Cardoso
author_sort Oliveira, Ana Rita
collection PubMed
description [Image: see text] Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO(2) reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S](1+) clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S](1+) centers range between −250 and −530 mV. Two distinct W(V) signals were detected, W(D)(V) and W(F)(V), which differ in only the g(2)-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of W(VI/V) was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate W(V) state of FdhAB.
format Online
Article
Text
id pubmed-9774666
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-97746662022-12-23 Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis Oliveira, Ana Rita Mota, Cristiano Klymanska, Kateryna Biaso, Frédéric Romão, Maria João Guigliarelli, Bruno Pereira, Inês Cardoso ACS Chem Biol [Image: see text] Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO(2) reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe–4S](1+) clusters, and full reduction requires Ti(III)–citrate. The redox potentials of the four [4Fe–4S](1+) centers range between −250 and −530 mV. Two distinct W(V) signals were detected, W(D)(V) and W(F)(V), which differ in only the g(2)-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of W(VI/V) was determined to be −370 mV when reduced by dithionite and −340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate W(V) state of FdhAB. American Chemical Society 2022-06-29 2022-07-15 /pmc/articles/PMC9774666/ /pubmed/35766974 http://dx.doi.org/10.1021/acschembio.2c00336 Text en © 2022 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Oliveira, Ana Rita
Mota, Cristiano
Klymanska, Kateryna
Biaso, Frédéric
Romão, Maria João
Guigliarelli, Bruno
Pereira, Inês Cardoso
Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis
title Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis
title_full Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis
title_fullStr Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis
title_full_unstemmed Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis
title_short Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis
title_sort spectroscopic and structural characterization of reduced desulfovibrio vulgaris hildenborough w-fdhab reveals stable metal coordination during catalysis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9774666/
https://www.ncbi.nlm.nih.gov/pubmed/35766974
http://dx.doi.org/10.1021/acschembio.2c00336
work_keys_str_mv AT oliveiraanarita spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis
AT motacristiano spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis
AT klymanskakateryna spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis
AT biasofrederic spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis
AT romaomariajoao spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis
AT guigliarellibruno spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis
AT pereirainescardoso spectroscopicandstructuralcharacterizationofreduceddesulfovibriovulgarishildenboroughwfdhabrevealsstablemetalcoordinationduringcatalysis