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Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source

Photoacoustic (PA) imaging is an emerging hybrid imaging modality that combines rich optical spectroscopic contrast and high ultrasonic resolution, and thus holds tremendous promise for a wide range of pre-clinical and clinical applications. Compact and affordable light sources such as light-emittin...

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Autores principales: Shi, Mengjie, Vercauteren, Tom, Xia, Wenfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Optica Publishing Group 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9774869/
https://www.ncbi.nlm.nih.gov/pubmed/36589568
http://dx.doi.org/10.1364/BOE.471198
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author Shi, Mengjie
Vercauteren, Tom
Xia, Wenfeng
author_facet Shi, Mengjie
Vercauteren, Tom
Xia, Wenfeng
author_sort Shi, Mengjie
collection PubMed
description Photoacoustic (PA) imaging is an emerging hybrid imaging modality that combines rich optical spectroscopic contrast and high ultrasonic resolution, and thus holds tremendous promise for a wide range of pre-clinical and clinical applications. Compact and affordable light sources such as light-emitting diodes (LEDs) and laser diodes (LDs) are promising alternatives to bulky and expensive solid-state laser systems that are commonly used as PA light sources. These could accelerate the clinical translation of PA technology. However, PA signals generated with these light sources are readily degraded by noise due to the low optical fluence, leading to decreased signal-to-noise ratio (SNR) in PA images. In this work, a spatiotemporal singular value decomposition (SVD) based PA denoising method was investigated for these light sources that usually have low fluence and high repetition rates. The proposed method leverages both spatial and temporal correlations between radiofrequency (RF) data frames. Validation was performed on simulations and in vivo PA data acquired from human fingers (2D) and forearm (3D) using a LED-based system. Spatiotemporal SVD greatly enhanced the PA signals of blood vessels corrupted by noise while preserving a high temporal resolution to slow motions, improving the SNR of in vivo PA images by 90.3%, 56.0%, and 187.4% compared to single frame-based wavelet denoising, averaging across 200 frames, and single frame without denoising, respectively. With a fast processing time of SVD (∼50 µs per frame), the proposed method is well suited to PA imaging systems with low-energy excitation light sources for real-time in vivo applications.
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spelling pubmed-97748692022-12-29 Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source Shi, Mengjie Vercauteren, Tom Xia, Wenfeng Biomed Opt Express Article Photoacoustic (PA) imaging is an emerging hybrid imaging modality that combines rich optical spectroscopic contrast and high ultrasonic resolution, and thus holds tremendous promise for a wide range of pre-clinical and clinical applications. Compact and affordable light sources such as light-emitting diodes (LEDs) and laser diodes (LDs) are promising alternatives to bulky and expensive solid-state laser systems that are commonly used as PA light sources. These could accelerate the clinical translation of PA technology. However, PA signals generated with these light sources are readily degraded by noise due to the low optical fluence, leading to decreased signal-to-noise ratio (SNR) in PA images. In this work, a spatiotemporal singular value decomposition (SVD) based PA denoising method was investigated for these light sources that usually have low fluence and high repetition rates. The proposed method leverages both spatial and temporal correlations between radiofrequency (RF) data frames. Validation was performed on simulations and in vivo PA data acquired from human fingers (2D) and forearm (3D) using a LED-based system. Spatiotemporal SVD greatly enhanced the PA signals of blood vessels corrupted by noise while preserving a high temporal resolution to slow motions, improving the SNR of in vivo PA images by 90.3%, 56.0%, and 187.4% compared to single frame-based wavelet denoising, averaging across 200 frames, and single frame without denoising, respectively. With a fast processing time of SVD (∼50 µs per frame), the proposed method is well suited to PA imaging systems with low-energy excitation light sources for real-time in vivo applications. Optica Publishing Group 2022-11-14 /pmc/articles/PMC9774869/ /pubmed/36589568 http://dx.doi.org/10.1364/BOE.471198 Text en Published by Optica Publishing Group under the terms of the Creative Commons Attribution 4.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI. https://creativecommons.org/licenses/by/4.0/ https://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Shi, Mengjie
Vercauteren, Tom
Xia, Wenfeng
Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
title Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
title_full Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
title_fullStr Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
title_full_unstemmed Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
title_short Spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
title_sort spatiotemporal singular value decomposition for denoising in photoacoustic imaging with a low-energy excitation light source
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9774869/
https://www.ncbi.nlm.nih.gov/pubmed/36589568
http://dx.doi.org/10.1364/BOE.471198
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