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A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence
BACKGROUND: This study aimed to explore the clinical significance of cellular senescence in uterine corpus endometrial carcinoma (UCEC). METHODS: Cluster analysis was performed on GEO data and TCGA data based on cellular senescence related genes, and then performed subtype analysis on differentially...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9775865/ https://www.ncbi.nlm.nih.gov/pubmed/36568182 http://dx.doi.org/10.3389/fonc.2022.1054564 |
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author | Gao, Lulu Wang, Xiangdong Wang, Xuehai Wang, Fengxu Tang, Juan Ji, Jinfeng |
author_facet | Gao, Lulu Wang, Xiangdong Wang, Xuehai Wang, Fengxu Tang, Juan Ji, Jinfeng |
author_sort | Gao, Lulu |
collection | PubMed |
description | BACKGROUND: This study aimed to explore the clinical significance of cellular senescence in uterine corpus endometrial carcinoma (UCEC). METHODS: Cluster analysis was performed on GEO data and TCGA data based on cellular senescence related genes, and then performed subtype analysis on differentially expressed genes between subtypes. The prognostic model was constructed using Lasso regression. Survival analysis, microenvironment analysis, immune analysis, mutation analysis, and drug susceptibility analysis were performed to evaluate the practical relevance. Ultimately, a clinical nomogram was constructed and cellular senescence-related genes expression was investigated by qRT-PCR. RESULTS: We ultimately identified two subtypes. The prognostic model divides patients into high-risk and low-risk groups. There were notable discrepancies in prognosis, tumor microenvironment, immunity, and mutation between the two subtypes and groups. There was a notable connection between drug-sensitive and risk scores. The nomogram has good calibration with AUC values between 0.75-0.8. In addition, cellular senescence-related genes expression was investigated qRT-PCR. CONCLUSION: Our model and nomogram may effectively forecast patient prognosis and serve as a reference for patient management. |
format | Online Article Text |
id | pubmed-9775865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97758652022-12-23 A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence Gao, Lulu Wang, Xiangdong Wang, Xuehai Wang, Fengxu Tang, Juan Ji, Jinfeng Front Oncol Oncology BACKGROUND: This study aimed to explore the clinical significance of cellular senescence in uterine corpus endometrial carcinoma (UCEC). METHODS: Cluster analysis was performed on GEO data and TCGA data based on cellular senescence related genes, and then performed subtype analysis on differentially expressed genes between subtypes. The prognostic model was constructed using Lasso regression. Survival analysis, microenvironment analysis, immune analysis, mutation analysis, and drug susceptibility analysis were performed to evaluate the practical relevance. Ultimately, a clinical nomogram was constructed and cellular senescence-related genes expression was investigated by qRT-PCR. RESULTS: We ultimately identified two subtypes. The prognostic model divides patients into high-risk and low-risk groups. There were notable discrepancies in prognosis, tumor microenvironment, immunity, and mutation between the two subtypes and groups. There was a notable connection between drug-sensitive and risk scores. The nomogram has good calibration with AUC values between 0.75-0.8. In addition, cellular senescence-related genes expression was investigated qRT-PCR. CONCLUSION: Our model and nomogram may effectively forecast patient prognosis and serve as a reference for patient management. Frontiers Media S.A. 2022-12-08 /pmc/articles/PMC9775865/ /pubmed/36568182 http://dx.doi.org/10.3389/fonc.2022.1054564 Text en Copyright © 2022 Gao, Wang, Wang, Wang, Tang and Ji https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Gao, Lulu Wang, Xiangdong Wang, Xuehai Wang, Fengxu Tang, Juan Ji, Jinfeng A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
title | A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
title_full | A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
title_fullStr | A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
title_full_unstemmed | A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
title_short | A prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
title_sort | prognostic model and immune regulation analysis of uterine corpus endometrial carcinoma based on cellular senescence |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9775865/ https://www.ncbi.nlm.nih.gov/pubmed/36568182 http://dx.doi.org/10.3389/fonc.2022.1054564 |
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