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Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data

The development of genomic technology for smart diagnosis and therapies for various diseases has lately been the most demanding area for computer-aided diagnostic and treatment research. Exponential breakthroughs in artificial intelligence and machine intelligence technologies could pave the way for...

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Autores principales: Srinivasu, Parvathaneni Naga, Shafi, Jana, Krishna, T Balamurali, Sujatha, Canavoy Narahari, Praveen, S Phani, Ijaz, Muhammad Fazal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9776641/
https://www.ncbi.nlm.nih.gov/pubmed/36553074
http://dx.doi.org/10.3390/diagnostics12123067
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author Srinivasu, Parvathaneni Naga
Shafi, Jana
Krishna, T Balamurali
Sujatha, Canavoy Narahari
Praveen, S Phani
Ijaz, Muhammad Fazal
author_facet Srinivasu, Parvathaneni Naga
Shafi, Jana
Krishna, T Balamurali
Sujatha, Canavoy Narahari
Praveen, S Phani
Ijaz, Muhammad Fazal
author_sort Srinivasu, Parvathaneni Naga
collection PubMed
description The development of genomic technology for smart diagnosis and therapies for various diseases has lately been the most demanding area for computer-aided diagnostic and treatment research. Exponential breakthroughs in artificial intelligence and machine intelligence technologies could pave the way for identifying challenges afflicting the healthcare industry. Genomics is paving the way for predicting future illnesses, including cancer, Alzheimer’s disease, and diabetes. Machine learning advancements have expedited the pace of biomedical informatics research and inspired new branches of computational biology. Furthermore, knowing gene relationships has resulted in developing more accurate models that can effectively detect patterns in vast volumes of data, making classification models important in various domains. Recurrent Neural Network models have a memory that allows them to quickly remember knowledge from previous cycles and process genetic data. The present work focuses on type 2 diabetes prediction using gene sequences derived from genomic DNA fragments through automated feature selection and feature extraction procedures for matching gene patterns with training data. The suggested model was tested using tabular data to predict type 2 diabetes based on several parameters. The performance of neural networks incorporating Recurrent Neural Network (RNN) components, Long Short-Term Memory (LSTM), and Gated Recurrent Units (GRU) was tested in this research. The model’s efficiency is assessed using the evaluation metrics such as Sensitivity, Specificity, Accuracy, F1-Score, and Mathews Correlation Coefficient (MCC). The suggested technique predicted future illnesses with fair Accuracy. Furthermore, our research showed that the suggested model could be used in real-world scenarios and that input risk variables from an end-user Android application could be kept and evaluated on a secure remote server.
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spelling pubmed-97766412022-12-23 Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data Srinivasu, Parvathaneni Naga Shafi, Jana Krishna, T Balamurali Sujatha, Canavoy Narahari Praveen, S Phani Ijaz, Muhammad Fazal Diagnostics (Basel) Article The development of genomic technology for smart diagnosis and therapies for various diseases has lately been the most demanding area for computer-aided diagnostic and treatment research. Exponential breakthroughs in artificial intelligence and machine intelligence technologies could pave the way for identifying challenges afflicting the healthcare industry. Genomics is paving the way for predicting future illnesses, including cancer, Alzheimer’s disease, and diabetes. Machine learning advancements have expedited the pace of biomedical informatics research and inspired new branches of computational biology. Furthermore, knowing gene relationships has resulted in developing more accurate models that can effectively detect patterns in vast volumes of data, making classification models important in various domains. Recurrent Neural Network models have a memory that allows them to quickly remember knowledge from previous cycles and process genetic data. The present work focuses on type 2 diabetes prediction using gene sequences derived from genomic DNA fragments through automated feature selection and feature extraction procedures for matching gene patterns with training data. The suggested model was tested using tabular data to predict type 2 diabetes based on several parameters. The performance of neural networks incorporating Recurrent Neural Network (RNN) components, Long Short-Term Memory (LSTM), and Gated Recurrent Units (GRU) was tested in this research. The model’s efficiency is assessed using the evaluation metrics such as Sensitivity, Specificity, Accuracy, F1-Score, and Mathews Correlation Coefficient (MCC). The suggested technique predicted future illnesses with fair Accuracy. Furthermore, our research showed that the suggested model could be used in real-world scenarios and that input risk variables from an end-user Android application could be kept and evaluated on a secure remote server. MDPI 2022-12-06 /pmc/articles/PMC9776641/ /pubmed/36553074 http://dx.doi.org/10.3390/diagnostics12123067 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Srinivasu, Parvathaneni Naga
Shafi, Jana
Krishna, T Balamurali
Sujatha, Canavoy Narahari
Praveen, S Phani
Ijaz, Muhammad Fazal
Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
title Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
title_full Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
title_fullStr Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
title_full_unstemmed Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
title_short Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
title_sort using recurrent neural networks for predicting type-2 diabetes from genomic and tabular data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9776641/
https://www.ncbi.nlm.nih.gov/pubmed/36553074
http://dx.doi.org/10.3390/diagnostics12123067
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