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Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis

This investigation aimed to explore deep learning (DL) models’ potential for diagnosing Pseudomonas keratitis using external eye images. In the retrospective research, the images of bacterial keratitis (BK, n = 929), classified as Pseudomonas (n = 618) and non-Pseudomonas (n = 311) keratitis, were c...

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Autores principales: Kuo, Ming-Tse, Hsu, Benny Wei-Yun, Lin, Yi Sheng, Fang, Po-Chiung, Yu, Hun-Ju, Hsiao, Yu-Ting, Tseng, Vincent S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9777188/
https://www.ncbi.nlm.nih.gov/pubmed/36552954
http://dx.doi.org/10.3390/diagnostics12122948
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author Kuo, Ming-Tse
Hsu, Benny Wei-Yun
Lin, Yi Sheng
Fang, Po-Chiung
Yu, Hun-Ju
Hsiao, Yu-Ting
Tseng, Vincent S.
author_facet Kuo, Ming-Tse
Hsu, Benny Wei-Yun
Lin, Yi Sheng
Fang, Po-Chiung
Yu, Hun-Ju
Hsiao, Yu-Ting
Tseng, Vincent S.
author_sort Kuo, Ming-Tse
collection PubMed
description This investigation aimed to explore deep learning (DL) models’ potential for diagnosing Pseudomonas keratitis using external eye images. In the retrospective research, the images of bacterial keratitis (BK, n = 929), classified as Pseudomonas (n = 618) and non-Pseudomonas (n = 311) keratitis, were collected. Eight DL algorithms, including ResNet50, DenseNet121, ResNeXt50, SE-ResNet50, and EfficientNets B0 to B3, were adopted as backbone models to train and obtain the best ensemble 2-, 3-, 4-, and 5-DL models. Five-fold cross-validation was used to determine the ability of single and ensemble models to diagnose Pseudomonas keratitis. The EfficientNet B2 model had the highest accuracy (71.2%) of the eight single-DL models, while the best ensemble 4-DL model showed the highest accuracy (72.1%) among the ensemble models. However, no statistical difference was shown in the area under the receiver operating characteristic curve and diagnostic accuracy among these single-DL models and among the four best ensemble models. As a proof of concept, the DL approach, via external eye photos, could assist in identifying Pseudomonas keratitis from BK patients. All the best ensemble models can enhance the performance of constituent DL models in diagnosing Pseudomonas keratitis, but the enhancement effect appears to be limited.
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spelling pubmed-97771882022-12-23 Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis Kuo, Ming-Tse Hsu, Benny Wei-Yun Lin, Yi Sheng Fang, Po-Chiung Yu, Hun-Ju Hsiao, Yu-Ting Tseng, Vincent S. Diagnostics (Basel) Article This investigation aimed to explore deep learning (DL) models’ potential for diagnosing Pseudomonas keratitis using external eye images. In the retrospective research, the images of bacterial keratitis (BK, n = 929), classified as Pseudomonas (n = 618) and non-Pseudomonas (n = 311) keratitis, were collected. Eight DL algorithms, including ResNet50, DenseNet121, ResNeXt50, SE-ResNet50, and EfficientNets B0 to B3, were adopted as backbone models to train and obtain the best ensemble 2-, 3-, 4-, and 5-DL models. Five-fold cross-validation was used to determine the ability of single and ensemble models to diagnose Pseudomonas keratitis. The EfficientNet B2 model had the highest accuracy (71.2%) of the eight single-DL models, while the best ensemble 4-DL model showed the highest accuracy (72.1%) among the ensemble models. However, no statistical difference was shown in the area under the receiver operating characteristic curve and diagnostic accuracy among these single-DL models and among the four best ensemble models. As a proof of concept, the DL approach, via external eye photos, could assist in identifying Pseudomonas keratitis from BK patients. All the best ensemble models can enhance the performance of constituent DL models in diagnosing Pseudomonas keratitis, but the enhancement effect appears to be limited. MDPI 2022-11-25 /pmc/articles/PMC9777188/ /pubmed/36552954 http://dx.doi.org/10.3390/diagnostics12122948 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kuo, Ming-Tse
Hsu, Benny Wei-Yun
Lin, Yi Sheng
Fang, Po-Chiung
Yu, Hun-Ju
Hsiao, Yu-Ting
Tseng, Vincent S.
Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis
title Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis
title_full Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis
title_fullStr Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis
title_full_unstemmed Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis
title_short Deep Learning Approach in Image Diagnosis of Pseudomonas Keratitis
title_sort deep learning approach in image diagnosis of pseudomonas keratitis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9777188/
https://www.ncbi.nlm.nih.gov/pubmed/36552954
http://dx.doi.org/10.3390/diagnostics12122948
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