Cargando…
Multi-Task Learning for Compositional Data via Sparse Network Lasso
Multi-task learning is a statistical methodology that aims to improve the generalization performances of estimation and prediction tasks by sharing common information among multiple tasks. On the other hand, compositional data consist of proportions as components summing to one. Because components o...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9777680/ https://www.ncbi.nlm.nih.gov/pubmed/36554244 http://dx.doi.org/10.3390/e24121839 |
_version_ | 1784856165178408960 |
---|---|
author | Okazaki, Akira Kawano, Shuichi |
author_facet | Okazaki, Akira Kawano, Shuichi |
author_sort | Okazaki, Akira |
collection | PubMed |
description | Multi-task learning is a statistical methodology that aims to improve the generalization performances of estimation and prediction tasks by sharing common information among multiple tasks. On the other hand, compositional data consist of proportions as components summing to one. Because components of compositional data depend on each other, existing methods for multi-task learning cannot be directly applied to them. In the framework of multi-task learning, a network lasso regularization enables us to consider each sample as a single task and construct different models for each one. In this paper, we propose a multi-task learning method for compositional data using a sparse network lasso. We focus on a symmetric form of the log-contrast model, which is a regression model with compositional covariates. Our proposed method enables us to extract latent clusters and relevant variables for compositional data by considering relationships among samples. The effectiveness of the proposed method is evaluated through simulation studies and application to gut microbiome data. Both results show that the prediction accuracy of our proposed method is better than existing methods when information about relationships among samples is appropriately obtained. |
format | Online Article Text |
id | pubmed-9777680 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97776802022-12-23 Multi-Task Learning for Compositional Data via Sparse Network Lasso Okazaki, Akira Kawano, Shuichi Entropy (Basel) Article Multi-task learning is a statistical methodology that aims to improve the generalization performances of estimation and prediction tasks by sharing common information among multiple tasks. On the other hand, compositional data consist of proportions as components summing to one. Because components of compositional data depend on each other, existing methods for multi-task learning cannot be directly applied to them. In the framework of multi-task learning, a network lasso regularization enables us to consider each sample as a single task and construct different models for each one. In this paper, we propose a multi-task learning method for compositional data using a sparse network lasso. We focus on a symmetric form of the log-contrast model, which is a regression model with compositional covariates. Our proposed method enables us to extract latent clusters and relevant variables for compositional data by considering relationships among samples. The effectiveness of the proposed method is evaluated through simulation studies and application to gut microbiome data. Both results show that the prediction accuracy of our proposed method is better than existing methods when information about relationships among samples is appropriately obtained. MDPI 2022-12-17 /pmc/articles/PMC9777680/ /pubmed/36554244 http://dx.doi.org/10.3390/e24121839 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Okazaki, Akira Kawano, Shuichi Multi-Task Learning for Compositional Data via Sparse Network Lasso |
title | Multi-Task Learning for Compositional Data via Sparse Network Lasso |
title_full | Multi-Task Learning for Compositional Data via Sparse Network Lasso |
title_fullStr | Multi-Task Learning for Compositional Data via Sparse Network Lasso |
title_full_unstemmed | Multi-Task Learning for Compositional Data via Sparse Network Lasso |
title_short | Multi-Task Learning for Compositional Data via Sparse Network Lasso |
title_sort | multi-task learning for compositional data via sparse network lasso |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9777680/ https://www.ncbi.nlm.nih.gov/pubmed/36554244 http://dx.doi.org/10.3390/e24121839 |
work_keys_str_mv | AT okazakiakira multitasklearningforcompositionaldataviasparsenetworklasso AT kawanoshuichi multitasklearningforcompositionaldataviasparsenetworklasso |