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Foraging Dynamics and Entropy Production in a Simulated Proto-Cell

All organisms depend on a supply of energetic resources to power behavior and the irreversible entropy-producing processes that sustain them. Dissipative structure theory has often been a source of inspiration for better understanding the thermodynamics of biology, yet real organisms are inordinatel...

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Detalles Bibliográficos
Autores principales: De Bari, Benjamin, Kondepudi, Dilip K., Dixon, James A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778031/
https://www.ncbi.nlm.nih.gov/pubmed/36554198
http://dx.doi.org/10.3390/e24121793
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author De Bari, Benjamin
Kondepudi, Dilip K.
Dixon, James A.
author_facet De Bari, Benjamin
Kondepudi, Dilip K.
Dixon, James A.
author_sort De Bari, Benjamin
collection PubMed
description All organisms depend on a supply of energetic resources to power behavior and the irreversible entropy-producing processes that sustain them. Dissipative structure theory has often been a source of inspiration for better understanding the thermodynamics of biology, yet real organisms are inordinately more complex than most laboratory systems. Here we report on a simulated chemical dissipative structure that operates as a proto cell. The simulated swimmer moves through a 1D environment collecting resources that drive a nonlinear reaction network interior to the swimmer. The model minimally represents properties of a simple organism including rudimentary foraging and chemotaxis and an analog of a metabolism in the nonlinear reaction network. We evaluated how dynamical stability of the foraging dynamics (i.e., swimming and chemotaxis) relates to the rate of entropy production. Results suggested a relationship between dynamical steady states and entropy production that was tuned by the relative coordination of foraging and metabolic processes. Results include evidence in support of and contradicting one formulation of a maximum entropy production principle. We discuss the status of this principle and its relevance to biology.
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spelling pubmed-97780312022-12-23 Foraging Dynamics and Entropy Production in a Simulated Proto-Cell De Bari, Benjamin Kondepudi, Dilip K. Dixon, James A. Entropy (Basel) Article All organisms depend on a supply of energetic resources to power behavior and the irreversible entropy-producing processes that sustain them. Dissipative structure theory has often been a source of inspiration for better understanding the thermodynamics of biology, yet real organisms are inordinately more complex than most laboratory systems. Here we report on a simulated chemical dissipative structure that operates as a proto cell. The simulated swimmer moves through a 1D environment collecting resources that drive a nonlinear reaction network interior to the swimmer. The model minimally represents properties of a simple organism including rudimentary foraging and chemotaxis and an analog of a metabolism in the nonlinear reaction network. We evaluated how dynamical stability of the foraging dynamics (i.e., swimming and chemotaxis) relates to the rate of entropy production. Results suggested a relationship between dynamical steady states and entropy production that was tuned by the relative coordination of foraging and metabolic processes. Results include evidence in support of and contradicting one formulation of a maximum entropy production principle. We discuss the status of this principle and its relevance to biology. MDPI 2022-12-08 /pmc/articles/PMC9778031/ /pubmed/36554198 http://dx.doi.org/10.3390/e24121793 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
De Bari, Benjamin
Kondepudi, Dilip K.
Dixon, James A.
Foraging Dynamics and Entropy Production in a Simulated Proto-Cell
title Foraging Dynamics and Entropy Production in a Simulated Proto-Cell
title_full Foraging Dynamics and Entropy Production in a Simulated Proto-Cell
title_fullStr Foraging Dynamics and Entropy Production in a Simulated Proto-Cell
title_full_unstemmed Foraging Dynamics and Entropy Production in a Simulated Proto-Cell
title_short Foraging Dynamics and Entropy Production in a Simulated Proto-Cell
title_sort foraging dynamics and entropy production in a simulated proto-cell
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778031/
https://www.ncbi.nlm.nih.gov/pubmed/36554198
http://dx.doi.org/10.3390/e24121793
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