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Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum

Toxicodendron succedaneum (L.) Kuntze (T. succedaneum) is an economic tree species that produces urushiol and urushi wax, and it is of great value in industry and medicine. However, the stability of reference genes (RGs) has not been systematically reported in T. succedaneum to date. In this study,...

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Autores principales: Ma, Dongxiao, Zhang, Qin, Zhou, Jintao, Lu, Yu, Duan, Xiaomeng, He, Chengzhong, Yu, Jinde
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778191/
https://www.ncbi.nlm.nih.gov/pubmed/36553662
http://dx.doi.org/10.3390/genes13122396
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author Ma, Dongxiao
Zhang, Qin
Zhou, Jintao
Lu, Yu
Duan, Xiaomeng
He, Chengzhong
Yu, Jinde
author_facet Ma, Dongxiao
Zhang, Qin
Zhou, Jintao
Lu, Yu
Duan, Xiaomeng
He, Chengzhong
Yu, Jinde
author_sort Ma, Dongxiao
collection PubMed
description Toxicodendron succedaneum (L.) Kuntze (T. succedaneum) is an economic tree species that produces urushiol and urushi wax, and it is of great value in industry and medicine. However, the stability of reference genes (RGs) has not been systematically reported in T. succedaneum to date. In this study, the expression of 10 candidate RGs was analyzed by RT-qPCR in different tissues (roots, stems, leaves), stress treatments (high/low temperature, drought), and hormone stimulation (jasmonic acid, JA). Then, the stability ranking of 10 candidate genes was evaluated by ∆Ct analysis and three software programs: geNorm, NormFinder, and BestKeeper. Finally, RefFinder was used to comprehensively analyze the expression stability of 10 candidate genes. The comprehensive analysis showed that TsRG05/06, TsRG01/06, and TsRG03/ACT were stable under high/low-temperature stress, drought stress, and JA treatment, respectively. TsRG03 and ACT had stable expression in different tissues. While the TsRG03 and ACT were recommended as the suitable RGs for T. succedaneum in all samples. Meanwhile, UBQ was the least suitable as a reference gene for T. succedaneum. In addition, the results of geNorm showed that the combination of two stable RGs could make the results of gene expression more accurate. These results provide alternative RGs for the study of gene function, correction, and normalization of target gene expression and directed molecular breeding in T. succedaneum.
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spelling pubmed-97781912022-12-23 Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum Ma, Dongxiao Zhang, Qin Zhou, Jintao Lu, Yu Duan, Xiaomeng He, Chengzhong Yu, Jinde Genes (Basel) Article Toxicodendron succedaneum (L.) Kuntze (T. succedaneum) is an economic tree species that produces urushiol and urushi wax, and it is of great value in industry and medicine. However, the stability of reference genes (RGs) has not been systematically reported in T. succedaneum to date. In this study, the expression of 10 candidate RGs was analyzed by RT-qPCR in different tissues (roots, stems, leaves), stress treatments (high/low temperature, drought), and hormone stimulation (jasmonic acid, JA). Then, the stability ranking of 10 candidate genes was evaluated by ∆Ct analysis and three software programs: geNorm, NormFinder, and BestKeeper. Finally, RefFinder was used to comprehensively analyze the expression stability of 10 candidate genes. The comprehensive analysis showed that TsRG05/06, TsRG01/06, and TsRG03/ACT were stable under high/low-temperature stress, drought stress, and JA treatment, respectively. TsRG03 and ACT had stable expression in different tissues. While the TsRG03 and ACT were recommended as the suitable RGs for T. succedaneum in all samples. Meanwhile, UBQ was the least suitable as a reference gene for T. succedaneum. In addition, the results of geNorm showed that the combination of two stable RGs could make the results of gene expression more accurate. These results provide alternative RGs for the study of gene function, correction, and normalization of target gene expression and directed molecular breeding in T. succedaneum. MDPI 2022-12-17 /pmc/articles/PMC9778191/ /pubmed/36553662 http://dx.doi.org/10.3390/genes13122396 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ma, Dongxiao
Zhang, Qin
Zhou, Jintao
Lu, Yu
Duan, Xiaomeng
He, Chengzhong
Yu, Jinde
Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
title Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
title_full Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
title_fullStr Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
title_full_unstemmed Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
title_short Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
title_sort identification of reliable reference genes under different stresses and in different tissues of toxicodendron succedaneum
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778191/
https://www.ncbi.nlm.nih.gov/pubmed/36553662
http://dx.doi.org/10.3390/genes13122396
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