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Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum
Toxicodendron succedaneum (L.) Kuntze (T. succedaneum) is an economic tree species that produces urushiol and urushi wax, and it is of great value in industry and medicine. However, the stability of reference genes (RGs) has not been systematically reported in T. succedaneum to date. In this study,...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778191/ https://www.ncbi.nlm.nih.gov/pubmed/36553662 http://dx.doi.org/10.3390/genes13122396 |
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author | Ma, Dongxiao Zhang, Qin Zhou, Jintao Lu, Yu Duan, Xiaomeng He, Chengzhong Yu, Jinde |
author_facet | Ma, Dongxiao Zhang, Qin Zhou, Jintao Lu, Yu Duan, Xiaomeng He, Chengzhong Yu, Jinde |
author_sort | Ma, Dongxiao |
collection | PubMed |
description | Toxicodendron succedaneum (L.) Kuntze (T. succedaneum) is an economic tree species that produces urushiol and urushi wax, and it is of great value in industry and medicine. However, the stability of reference genes (RGs) has not been systematically reported in T. succedaneum to date. In this study, the expression of 10 candidate RGs was analyzed by RT-qPCR in different tissues (roots, stems, leaves), stress treatments (high/low temperature, drought), and hormone stimulation (jasmonic acid, JA). Then, the stability ranking of 10 candidate genes was evaluated by ∆Ct analysis and three software programs: geNorm, NormFinder, and BestKeeper. Finally, RefFinder was used to comprehensively analyze the expression stability of 10 candidate genes. The comprehensive analysis showed that TsRG05/06, TsRG01/06, and TsRG03/ACT were stable under high/low-temperature stress, drought stress, and JA treatment, respectively. TsRG03 and ACT had stable expression in different tissues. While the TsRG03 and ACT were recommended as the suitable RGs for T. succedaneum in all samples. Meanwhile, UBQ was the least suitable as a reference gene for T. succedaneum. In addition, the results of geNorm showed that the combination of two stable RGs could make the results of gene expression more accurate. These results provide alternative RGs for the study of gene function, correction, and normalization of target gene expression and directed molecular breeding in T. succedaneum. |
format | Online Article Text |
id | pubmed-9778191 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97781912022-12-23 Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum Ma, Dongxiao Zhang, Qin Zhou, Jintao Lu, Yu Duan, Xiaomeng He, Chengzhong Yu, Jinde Genes (Basel) Article Toxicodendron succedaneum (L.) Kuntze (T. succedaneum) is an economic tree species that produces urushiol and urushi wax, and it is of great value in industry and medicine. However, the stability of reference genes (RGs) has not been systematically reported in T. succedaneum to date. In this study, the expression of 10 candidate RGs was analyzed by RT-qPCR in different tissues (roots, stems, leaves), stress treatments (high/low temperature, drought), and hormone stimulation (jasmonic acid, JA). Then, the stability ranking of 10 candidate genes was evaluated by ∆Ct analysis and three software programs: geNorm, NormFinder, and BestKeeper. Finally, RefFinder was used to comprehensively analyze the expression stability of 10 candidate genes. The comprehensive analysis showed that TsRG05/06, TsRG01/06, and TsRG03/ACT were stable under high/low-temperature stress, drought stress, and JA treatment, respectively. TsRG03 and ACT had stable expression in different tissues. While the TsRG03 and ACT were recommended as the suitable RGs for T. succedaneum in all samples. Meanwhile, UBQ was the least suitable as a reference gene for T. succedaneum. In addition, the results of geNorm showed that the combination of two stable RGs could make the results of gene expression more accurate. These results provide alternative RGs for the study of gene function, correction, and normalization of target gene expression and directed molecular breeding in T. succedaneum. MDPI 2022-12-17 /pmc/articles/PMC9778191/ /pubmed/36553662 http://dx.doi.org/10.3390/genes13122396 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ma, Dongxiao Zhang, Qin Zhou, Jintao Lu, Yu Duan, Xiaomeng He, Chengzhong Yu, Jinde Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum |
title | Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum |
title_full | Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum |
title_fullStr | Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum |
title_full_unstemmed | Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum |
title_short | Identification of Reliable Reference Genes under Different Stresses and in Different Tissues of Toxicodendron succedaneum |
title_sort | identification of reliable reference genes under different stresses and in different tissues of toxicodendron succedaneum |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778191/ https://www.ncbi.nlm.nih.gov/pubmed/36553662 http://dx.doi.org/10.3390/genes13122396 |
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