Cargando…
Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma
Dysregulation of amino acid metabolism (AAM) is an important factor in cancer progression. This study intended to study the prognostic value of AAM-related genes in lung adenocarcinoma (LUAD). Methods: The mRNA expression profiles of LUAD datasets from The Cancer Genome Atlas (TCGA) and Gene Express...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778477/ https://www.ncbi.nlm.nih.gov/pubmed/36553562 http://dx.doi.org/10.3390/genes13122295 |
_version_ | 1784856371233030144 |
---|---|
author | Chang, Wuguang Li, Hongmu Wu, Chun Zhong, Leqi Zhu, Tengfei Chang, Zenghao Ou, Wei Wang, Siyu |
author_facet | Chang, Wuguang Li, Hongmu Wu, Chun Zhong, Leqi Zhu, Tengfei Chang, Zenghao Ou, Wei Wang, Siyu |
author_sort | Chang, Wuguang |
collection | PubMed |
description | Dysregulation of amino acid metabolism (AAM) is an important factor in cancer progression. This study intended to study the prognostic value of AAM-related genes in lung adenocarcinoma (LUAD). Methods: The mRNA expression profiles of LUAD datasets from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) were applied as the training and validation sets. After identifying the differentially expressed AAM-related genes, an AAM-related gene signature (AAMRGS) was constructed and validated. Additionally, we systematically analyzed the differences in immune cell infiltration, biological pathways, immunotherapy response, and drug sensitivity between the two AAMRGS subgroups. Results: The prognosis-related signature was constructed on the grounds of key AAM-related genes. LUAD patients were divided into AAMRGS-high and -low groups. Patients in the two subgroups differed in prognosis, tumor microenvironment (TME), biological pathways, and sensitivity to chemotherapy and immunotherapy. The area under the receiver operating characteristics (ROC) and calibration curves showed good predictive ability for the nomogram. Analysis of immune cell infiltration revealed that the TME of the AAMRGS-low group was in a state of immune activation. Conclusion: We constructed an AAMRGS that could effectively predict prognosis and guide treatment strategies for patients with LUAD. |
format | Online Article Text |
id | pubmed-9778477 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97784772022-12-23 Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma Chang, Wuguang Li, Hongmu Wu, Chun Zhong, Leqi Zhu, Tengfei Chang, Zenghao Ou, Wei Wang, Siyu Genes (Basel) Article Dysregulation of amino acid metabolism (AAM) is an important factor in cancer progression. This study intended to study the prognostic value of AAM-related genes in lung adenocarcinoma (LUAD). Methods: The mRNA expression profiles of LUAD datasets from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) were applied as the training and validation sets. After identifying the differentially expressed AAM-related genes, an AAM-related gene signature (AAMRGS) was constructed and validated. Additionally, we systematically analyzed the differences in immune cell infiltration, biological pathways, immunotherapy response, and drug sensitivity between the two AAMRGS subgroups. Results: The prognosis-related signature was constructed on the grounds of key AAM-related genes. LUAD patients were divided into AAMRGS-high and -low groups. Patients in the two subgroups differed in prognosis, tumor microenvironment (TME), biological pathways, and sensitivity to chemotherapy and immunotherapy. The area under the receiver operating characteristics (ROC) and calibration curves showed good predictive ability for the nomogram. Analysis of immune cell infiltration revealed that the TME of the AAMRGS-low group was in a state of immune activation. Conclusion: We constructed an AAMRGS that could effectively predict prognosis and guide treatment strategies for patients with LUAD. MDPI 2022-12-06 /pmc/articles/PMC9778477/ /pubmed/36553562 http://dx.doi.org/10.3390/genes13122295 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chang, Wuguang Li, Hongmu Wu, Chun Zhong, Leqi Zhu, Tengfei Chang, Zenghao Ou, Wei Wang, Siyu Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma |
title | Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma |
title_full | Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma |
title_fullStr | Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma |
title_full_unstemmed | Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma |
title_short | Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma |
title_sort | identification of an amino acid metabolism-related gene signature for predicting prognosis in lung adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778477/ https://www.ncbi.nlm.nih.gov/pubmed/36553562 http://dx.doi.org/10.3390/genes13122295 |
work_keys_str_mv | AT changwuguang identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT lihongmu identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT wuchun identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT zhongleqi identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT zhutengfei identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT changzenghao identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT ouwei identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma AT wangsiyu identificationofanaminoacidmetabolismrelatedgenesignatureforpredictingprognosisinlungadenocarcinoma |