Cargando…
Role of Enzyme and Active Site Conformational Dynamics in the Catalysis by α-Amylase Explored with QM/MM Molecular Dynamics
[Image: see text] We assessed enzyme:substrate conformational dynamics and the rate-limiting glycosylation step of a human pancreatic α-amylase:maltopentose complex. Microsecond molecular dynamics simulations suggested that the distance of the catalytic Asp197 nucleophile to the anomeric carbon of t...
Autores principales: | Neves, Rui P. P., Fernandes, Pedro A., Ramos, Maria J. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9778734/ https://www.ncbi.nlm.nih.gov/pubmed/35880954 http://dx.doi.org/10.1021/acs.jcim.2c00691 |
Ejemplares similares
-
Exploring the Dependence of QM/MM Calculations of Enzyme Catalysis
on the Size of the QM Region
por: Jindal, Garima, et al.
Publicado: (2016) -
An Ab Initio QM/MM Study of the Electrostatic Contribution to Catalysis in the Active Site of Ketosteroid Isomerase
por: Wang, Xianwei, et al.
Publicado: (2018) -
Comparative Computational Approach To Study Enzyme
Reactions Using QM and QM-MM Methods
por: Yildiz, Ibrahim, et al.
Publicado: (2018) -
Binding mechanism of naringenin with monoamine oxidase – B enzyme: QM/MM and molecular dynamics perspective
por: Govindasamy, Hunday, et al.
Publicado: (2021) -
QM/MM Molecular Dynamics Studies of Metal Binding Proteins
por: Vidossich, Pietro, et al.
Publicado: (2014)