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XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification

Of the various tumour types, colorectal cancer and brain tumours are still considered among the most serious and deadly diseases in the world. Therefore, many researchers are interested in improving the accuracy and reliability of diagnostic medical machine learning models. In computer-aided diagnos...

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Autores principales: Abbas, Asmaa, Gaber, Mohamed Medhat, Abdelsamea, Mohammed M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9782528/
https://www.ncbi.nlm.nih.gov/pubmed/36560243
http://dx.doi.org/10.3390/s22249875
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author Abbas, Asmaa
Gaber, Mohamed Medhat
Abdelsamea, Mohammed M.
author_facet Abbas, Asmaa
Gaber, Mohamed Medhat
Abdelsamea, Mohammed M.
author_sort Abbas, Asmaa
collection PubMed
description Of the various tumour types, colorectal cancer and brain tumours are still considered among the most serious and deadly diseases in the world. Therefore, many researchers are interested in improving the accuracy and reliability of diagnostic medical machine learning models. In computer-aided diagnosis, self-supervised learning has been proven to be an effective solution when dealing with datasets with insufficient data annotations. However, medical image datasets often suffer from data irregularities, making the recognition task even more challenging. The class decomposition approach has provided a robust solution to such a challenging problem by simplifying the learning of class boundaries of a dataset. In this paper, we propose a robust self-supervised model, called XDecompo, to improve the transferability of features from the pretext task to the downstream task. XDecompo has been designed based on an affinity propagation-based class decomposition to effectively encourage learning of the class boundaries in the downstream task. XDecompo has an explainable component to highlight important pixels that contribute to classification and explain the effect of class decomposition on improving the speciality of extracted features. We also explore the generalisability of XDecompo in handling different medical datasets, such as histopathology for colorectal cancer and brain tumour images. The quantitative results demonstrate the robustness of XDecompo with high accuracy of 96.16% and 94.30% for CRC and brain tumour images, respectively. XDecompo has demonstrated its generalization capability and achieved high classification accuracy (both quantitatively and qualitatively) in different medical image datasets, compared with other models. Moreover, a post hoc explainable method has been used to validate the feature transferability, demonstrating highly accurate feature representations.
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spelling pubmed-97825282022-12-24 XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification Abbas, Asmaa Gaber, Mohamed Medhat Abdelsamea, Mohammed M. Sensors (Basel) Article Of the various tumour types, colorectal cancer and brain tumours are still considered among the most serious and deadly diseases in the world. Therefore, many researchers are interested in improving the accuracy and reliability of diagnostic medical machine learning models. In computer-aided diagnosis, self-supervised learning has been proven to be an effective solution when dealing with datasets with insufficient data annotations. However, medical image datasets often suffer from data irregularities, making the recognition task even more challenging. The class decomposition approach has provided a robust solution to such a challenging problem by simplifying the learning of class boundaries of a dataset. In this paper, we propose a robust self-supervised model, called XDecompo, to improve the transferability of features from the pretext task to the downstream task. XDecompo has been designed based on an affinity propagation-based class decomposition to effectively encourage learning of the class boundaries in the downstream task. XDecompo has an explainable component to highlight important pixels that contribute to classification and explain the effect of class decomposition on improving the speciality of extracted features. We also explore the generalisability of XDecompo in handling different medical datasets, such as histopathology for colorectal cancer and brain tumour images. The quantitative results demonstrate the robustness of XDecompo with high accuracy of 96.16% and 94.30% for CRC and brain tumour images, respectively. XDecompo has demonstrated its generalization capability and achieved high classification accuracy (both quantitatively and qualitatively) in different medical image datasets, compared with other models. Moreover, a post hoc explainable method has been used to validate the feature transferability, demonstrating highly accurate feature representations. MDPI 2022-12-15 /pmc/articles/PMC9782528/ /pubmed/36560243 http://dx.doi.org/10.3390/s22249875 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Abbas, Asmaa
Gaber, Mohamed Medhat
Abdelsamea, Mohammed M.
XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification
title XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification
title_full XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification
title_fullStr XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification
title_full_unstemmed XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification
title_short XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification
title_sort xdecompo: explainable decomposition approach in convolutional neural networks for tumour image classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9782528/
https://www.ncbi.nlm.nih.gov/pubmed/36560243
http://dx.doi.org/10.3390/s22249875
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