Cargando…
Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape
Starmerella bacillaris is often isolated from environments associated with grape and winemaking. S. bacillaris has many beneficial properties, including the ability to improve the flavor of wine, the production of beneficial metabolites, and the ability to biocontrol. S. bacillaris CC-PT4 (CGMCC No....
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9784136/ https://www.ncbi.nlm.nih.gov/pubmed/36547588 http://dx.doi.org/10.3390/jof8121255 |
_version_ | 1784857738553065472 |
---|---|
author | Shen, Yong Bai, Xue Zhou, Xiran Wang, Jiaxi Guo, Na Deng, Yanhong |
author_facet | Shen, Yong Bai, Xue Zhou, Xiran Wang, Jiaxi Guo, Na Deng, Yanhong |
author_sort | Shen, Yong |
collection | PubMed |
description | Starmerella bacillaris is often isolated from environments associated with grape and winemaking. S. bacillaris has many beneficial properties, including the ability to improve the flavor of wine, the production of beneficial metabolites, and the ability to biocontrol. S. bacillaris CC-PT4 (CGMCC No. 23573) was isolated from grape and can inhibit methicillin-resistant Staphylococcus aureus and adaptability to harsh environments. In this paper, the whole genome of S. bacillaris CC-PT4 was sequenced and bioinformatics analyses were performed. The S. bacillaris CC-PT4 genome was finally assembled into five scaffolds with a genome size of 9.45 Mb and a GC content of 39.5%. It was predicted that the strain contained 4150 protein-coding genes, of which two genes encoded killer toxin and one gene encoded lysostaphin. It also contains genes encoding F1F0-ATPases, Na(+)/H(+) antiporter, cation/H(+) antiporter, ATP-dependent bile acid permease, major facilitator superfamily (MFS) antiporters, and stress response protein, which help S. bacillaris CC-PT4 adapt to bile, acid, and other stressful environments. Proteins related to flocculation and adhesion have also been identified in the S. bacillaris CC-PT4 genome. Predicted by antiSMASH, two secondary metabolite biosynthesis gene clusters were found, and the synthesized metabolites may have antimicrobial effects. Furthermore, S. bacillaris CC-PT4 carried genes associated with pathogenicity and drug resistance. Overall, the whole genome sequencing and analysis of S. bacillaris CC-PT4 in this study provide valuable information for understanding the biological characteristics and further development of this strain. |
format | Online Article Text |
id | pubmed-9784136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97841362022-12-24 Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape Shen, Yong Bai, Xue Zhou, Xiran Wang, Jiaxi Guo, Na Deng, Yanhong J Fungi (Basel) Article Starmerella bacillaris is often isolated from environments associated with grape and winemaking. S. bacillaris has many beneficial properties, including the ability to improve the flavor of wine, the production of beneficial metabolites, and the ability to biocontrol. S. bacillaris CC-PT4 (CGMCC No. 23573) was isolated from grape and can inhibit methicillin-resistant Staphylococcus aureus and adaptability to harsh environments. In this paper, the whole genome of S. bacillaris CC-PT4 was sequenced and bioinformatics analyses were performed. The S. bacillaris CC-PT4 genome was finally assembled into five scaffolds with a genome size of 9.45 Mb and a GC content of 39.5%. It was predicted that the strain contained 4150 protein-coding genes, of which two genes encoded killer toxin and one gene encoded lysostaphin. It also contains genes encoding F1F0-ATPases, Na(+)/H(+) antiporter, cation/H(+) antiporter, ATP-dependent bile acid permease, major facilitator superfamily (MFS) antiporters, and stress response protein, which help S. bacillaris CC-PT4 adapt to bile, acid, and other stressful environments. Proteins related to flocculation and adhesion have also been identified in the S. bacillaris CC-PT4 genome. Predicted by antiSMASH, two secondary metabolite biosynthesis gene clusters were found, and the synthesized metabolites may have antimicrobial effects. Furthermore, S. bacillaris CC-PT4 carried genes associated with pathogenicity and drug resistance. Overall, the whole genome sequencing and analysis of S. bacillaris CC-PT4 in this study provide valuable information for understanding the biological characteristics and further development of this strain. MDPI 2022-11-28 /pmc/articles/PMC9784136/ /pubmed/36547588 http://dx.doi.org/10.3390/jof8121255 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Shen, Yong Bai, Xue Zhou, Xiran Wang, Jiaxi Guo, Na Deng, Yanhong Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape |
title | Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape |
title_full | Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape |
title_fullStr | Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape |
title_full_unstemmed | Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape |
title_short | Whole-Genome Analysis of Starmerella bacillaris CC-PT4 against MRSA, a Non-Saccharomyces Yeast Isolated from Grape |
title_sort | whole-genome analysis of starmerella bacillaris cc-pt4 against mrsa, a non-saccharomyces yeast isolated from grape |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9784136/ https://www.ncbi.nlm.nih.gov/pubmed/36547588 http://dx.doi.org/10.3390/jof8121255 |
work_keys_str_mv | AT shenyong wholegenomeanalysisofstarmerellabacillarisccpt4againstmrsaanonsaccharomycesyeastisolatedfromgrape AT baixue wholegenomeanalysisofstarmerellabacillarisccpt4againstmrsaanonsaccharomycesyeastisolatedfromgrape AT zhouxiran wholegenomeanalysisofstarmerellabacillarisccpt4againstmrsaanonsaccharomycesyeastisolatedfromgrape AT wangjiaxi wholegenomeanalysisofstarmerellabacillarisccpt4againstmrsaanonsaccharomycesyeastisolatedfromgrape AT guona wholegenomeanalysisofstarmerellabacillarisccpt4againstmrsaanonsaccharomycesyeastisolatedfromgrape AT dengyanhong wholegenomeanalysisofstarmerellabacillarisccpt4againstmrsaanonsaccharomycesyeastisolatedfromgrape |