Cargando…
Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets
BACKGROUND: Supervised deep learning in radiology suffers from notorious inherent limitations: 1) It requires large, hand-annotated data sets; (2) It is non-generalizable; and (3) It lacks explainability and intuition. It has recently been proposed that reinforcement learning addresses all three of...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9784281/ https://www.ncbi.nlm.nih.gov/pubmed/36564724 http://dx.doi.org/10.1186/s12880-022-00919-x |
_version_ | 1784857772676874240 |
---|---|
author | Stember, J. N. Shalu, H. |
author_facet | Stember, J. N. Shalu, H. |
author_sort | Stember, J. N. |
collection | PubMed |
description | BACKGROUND: Supervised deep learning in radiology suffers from notorious inherent limitations: 1) It requires large, hand-annotated data sets; (2) It is non-generalizable; and (3) It lacks explainability and intuition. It has recently been proposed that reinforcement learning addresses all three of these limitations. Notable prior work applied deep reinforcement learning to localize brain tumors with radiologist eye tracking points, which limits the state-action space. Here, we generalize Deep Q Learning to a gridworld-based environment so that only the images and image masks are required. METHODS: We trained a Deep [Formula: see text] network on 30 two-dimensional image slices from the BraTS brain tumor database. Each image contained one lesion. We then tested the trained Deep Q network on a separate set of 30 testing set images. For comparison, we also trained and tested a keypoint detection supervised deep learning network on the same set of training/testing images. RESULTS: Whereas the supervised approach quickly overfit the training data and predictably performed poorly on the testing set (11% accuracy), the Deep [Formula: see text] learning approach showed progressive improved generalizability to the testing set over training time, reaching 70% accuracy. CONCLUSION: We have successfully applied reinforcement learning to localize brain tumors on 2D contrast-enhanced MRI brain images. This represents a generalization of recent work to a gridworld setting naturally suitable for analyzing medical images. We have shown that reinforcement learning does not over-fit small training sets, and can generalize to a separate testing set. |
format | Online Article Text |
id | pubmed-9784281 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-97842812022-12-24 Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets Stember, J. N. Shalu, H. BMC Med Imaging Research Article BACKGROUND: Supervised deep learning in radiology suffers from notorious inherent limitations: 1) It requires large, hand-annotated data sets; (2) It is non-generalizable; and (3) It lacks explainability and intuition. It has recently been proposed that reinforcement learning addresses all three of these limitations. Notable prior work applied deep reinforcement learning to localize brain tumors with radiologist eye tracking points, which limits the state-action space. Here, we generalize Deep Q Learning to a gridworld-based environment so that only the images and image masks are required. METHODS: We trained a Deep [Formula: see text] network on 30 two-dimensional image slices from the BraTS brain tumor database. Each image contained one lesion. We then tested the trained Deep Q network on a separate set of 30 testing set images. For comparison, we also trained and tested a keypoint detection supervised deep learning network on the same set of training/testing images. RESULTS: Whereas the supervised approach quickly overfit the training data and predictably performed poorly on the testing set (11% accuracy), the Deep [Formula: see text] learning approach showed progressive improved generalizability to the testing set over training time, reaching 70% accuracy. CONCLUSION: We have successfully applied reinforcement learning to localize brain tumors on 2D contrast-enhanced MRI brain images. This represents a generalization of recent work to a gridworld setting naturally suitable for analyzing medical images. We have shown that reinforcement learning does not over-fit small training sets, and can generalize to a separate testing set. BioMed Central 2022-12-23 /pmc/articles/PMC9784281/ /pubmed/36564724 http://dx.doi.org/10.1186/s12880-022-00919-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Stember, J. N. Shalu, H. Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets |
title | Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets |
title_full | Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets |
title_fullStr | Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets |
title_full_unstemmed | Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets |
title_short | Reinforcement learning using Deep [Formula: see text] networks and [Formula: see text] learning accurately localizes brain tumors on MRI with very small training sets |
title_sort | reinforcement learning using deep [formula: see text] networks and [formula: see text] learning accurately localizes brain tumors on mri with very small training sets |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9784281/ https://www.ncbi.nlm.nih.gov/pubmed/36564724 http://dx.doi.org/10.1186/s12880-022-00919-x |
work_keys_str_mv | AT stemberjn reinforcementlearningusingdeepformulaseetextnetworksandformulaseetextlearningaccuratelylocalizesbraintumorsonmriwithverysmalltrainingsets AT shaluh reinforcementlearningusingdeepformulaseetextnetworksandformulaseetextlearningaccuratelylocalizesbraintumorsonmriwithverysmalltrainingsets |